Protein

View in Explore
Genbank accession
QBX27861.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSLVETIPIKVLFDRKEASQWKSENPVVDEGELVVELDTHKLKVGDGKTAYNDLPYYEGPQGESVTKVQLSEDGELSVWIGDRETKLGNVKGSKGDTGTGITDIRKEGETLTITLSDESRKTFTIPNGKQGPRGKSVESARVDESGHLKLKIEEETELDLGSVKGDKGPKGDSITITSHKRVSDGTQVSFSDGTQIIVPKGEKGDVNGINLEDYVTKSELKNVAPKGVHIGETPPEDTEKLWIDTSVVTEGDLKGADLSQLMKNINVAEKIKKLFETKIYAVDFTNQTQITANDNSKLDYRRMYVSGNIAVIHLDFQTTSGDWRAIATIPEGAPTPKGVVEVQVGNGNVWMEPNSRDIHASRITTPRNIVNLIYFVDLEEEG
Physico‐chemical
properties
protein length:382 AA
molecular weight: 41897,35100 Da
isoelectric point:4,95752
aromaticity:0,05236
hydropathy:-0,57932

Domains

Domains [InterPro]
SSF69349
STR
9–234
SSF69349
IPR041352
ATT
17–49
IPR041352
DC_0679
STR
30–366
DC_0679
QBX27861.1
1 382
Architecture
ATT
STR
ATT 9-49 | STR 50-366 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX27861.1
1 382
Domain Start End Length (AA) Confidence
N-terminal 1 269 269 0,9982
Central domain 270 371 103 0,0084
C-terminal 372 382 10 0,9976
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-269
Central
270-371
C-terminal
372-382

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan420
[NCBI] 		2548157 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus phocae C-4
[NCBI] 		1000562 Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus phocae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX27861.1 [NCBI]
Genbank nucleotide accession
MK448933.1 [NCBI]
CDS location
range 35224 -> 36372
strand +
CDS
ATGAGTTTAGTAGAAACAATACCGATAAAGGTTCTCTTTGACAGAAAAGAGGCTAGCCAATGGAAAAGCGAGAATCCCGTTGTTGATGAAGGAGAGTTAGTCGTTGAATTAGATACCCACAAGTTGAAAGTCGGAGACGGCAAAACAGCCTACAACGACCTTCCGTATTATGAAGGCCCACAAGGTGAATCCGTCACAAAAGTACAACTGTCTGAAGATGGCGAGTTGTCAGTATGGATTGGCGACAGAGAAACCAAGTTAGGAAACGTCAAAGGGAGTAAAGGCGATACAGGAACAGGTATCACTGACATTAGAAAAGAAGGCGAAACGCTAACTATCACACTATCTGACGAGTCACGAAAAACTTTTACTATCCCAAACGGGAAACAAGGCCCTAGAGGAAAAAGTGTCGAAAGCGCTAGAGTTGACGAATCTGGTCATTTAAAACTAAAAATTGAAGAGGAGACAGAGTTAGATCTTGGAAGCGTCAAAGGTGACAAAGGACCTAAAGGTGATAGCATTACTATCACAAGTCACAAACGTGTCTCGGATGGAACGCAGGTATCTTTTAGTGACGGAACTCAAATAATTGTTCCTAAAGGCGAAAAAGGCGATGTCAACGGCATCAATCTAGAGGATTACGTCACAAAATCTGAACTAAAAAACGTTGCTCCAAAGGGCGTCCACATCGGCGAAACACCACCTGAGGACACTGAAAAACTCTGGATAGACACATCTGTAGTTACCGAAGGTGACTTGAAAGGCGCTGATTTATCGCAACTTATGAAAAATATAAATGTTGCCGAAAAAATCAAAAAACTTTTTGAGACAAAAATTTATGCGGTTGATTTTACTAATCAAACGCAGATAACTGCAAACGACAATAGCAAGTTAGATTATCGCAGGATGTACGTGTCAGGCAATATCGCTGTTATTCACTTAGATTTCCAAACCACAAGCGGAGACTGGAGAGCAATTGCCACAATCCCTGAAGGCGCACCAACTCCCAAAGGGGTTGTTGAGGTTCAAGTTGGTAACGGTAACGTTTGGATGGAACCAAATAGTCGTGACATACACGCTAGCCGTATCACAACACCAAGAAACATCGTCAATTTGATTTATTTTGTCGATTTAGAAGAGGAGGGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
bee97df7f4cd6143063b2baf972b8141e6584e2fbadf7d7690df1d4443f75fab
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7535
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank