Protein

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Genbank accession
YP_009800680.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,80
Protein sequence
MFDPVTNSGYSYTLATGDGFSKSFTFGFTGYGVGYLNAADVHVYVDGKEKPNTINPSDPNRVNLEEAPELGTTVLIRRIQPLDRVYSDFERGNVYNKDQINNSFLNQLYIAHQFLDGFFDGGDNDDGDEVATGNLNMRGFKIYNLAKNTNDPHEAARLDRVMGVEDRISGLENSLSDLQLTSIPWSPPVAVQGQTKFISPIGVINPVVWLNGVLQDPLKGDFTVSKAERALIFTEPLDAGDRVFALMGDPIADVRAYSMSSYARVWWPANGFRPKLTDGSTIVTHRPQGKIESPAHAFFADKTRSCQAVVITPPDMPVAQGVEMRFMVSGENAGNTRWRIETALQGPGEFQADFTNPVEFTVAVRPQDVTHYRSVFPMPAADISQVLYIRVSRVPQHPEDTLATSSEDAFFLGIALNYVAE
Physico‐chemical
properties
protein length:421 AA
molecular weight: 46491,49170 Da
isoelectric point:4,85129
aromaticity:0,10451
hydropathy:-0,28195

Domains

Domains [InterPro]
DC_0041
STR
1–409
DC_0041
IPR005604
ATT
7–117
IPR005604
YP_009800680.1
1 421
Architecture
ATT
STR
ATT 1-117 | STR 118-409 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009800680.1
1 421
Domain Start End Length (AA) Confidence
N-terminal 1 380 380 0,7626
Central domain 381 410 31 0,0021
C-terminal 411 421 10 0,9979
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-380
Central
381-410
C-terminal
411-421

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Alpheus
[NCBI] 		2163983 Uroviricota > Caudoviricetes > Autographivirales > Colwellvirinae > Nerthusvirus
Host Pseudomonas syringae pv. avii
[NCBI] 		663959 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009800680.1 [NCBI]
Genbank nucleotide accession
NC_047957.1 [NCBI]
CDS location
range 35481 -> 36746
strand +
CDS
ATGTTCGATCCAGTAACCAACAGTGGCTACAGCTACACACTGGCCACGGGTGACGGCTTCTCGAAGTCCTTCACCTTCGGGTTCACTGGGTATGGCGTGGGCTACCTCAATGCCGCCGACGTGCATGTGTACGTCGATGGCAAGGAGAAACCCAACACCATCAACCCTTCCGACCCGAACCGTGTCAACCTTGAGGAAGCTCCCGAGCTGGGTACTACCGTCCTCATTCGACGCATCCAGCCGCTCGACCGGGTTTACTCTGACTTCGAGCGCGGCAACGTGTACAACAAAGACCAGATCAACAACTCGTTCCTGAACCAGTTGTACATCGCCCACCAGTTCCTTGACGGGTTCTTCGATGGCGGTGACAACGACGACGGCGACGAGGTGGCCACTGGCAACCTCAATATGCGCGGGTTCAAGATCTACAACCTCGCCAAGAACACCAACGACCCACACGAGGCTGCACGTCTCGACCGGGTTATGGGCGTAGAGGATCGTATTAGCGGGCTGGAGAACAGCCTGTCCGACCTGCAACTGACCAGCATCCCTTGGTCGCCACCCGTGGCGGTACAGGGCCAGACCAAGTTCATCTCGCCTATCGGTGTTATCAACCCAGTTGTCTGGCTTAACGGTGTGCTGCAAGACCCGCTCAAGGGTGACTTCACAGTGAGCAAGGCTGAGCGCGCCCTGATCTTCACCGAGCCGCTGGACGCTGGCGACCGGGTGTTTGCCCTGATGGGTGACCCTATCGCTGACGTTCGTGCCTACAGCATGTCTAGCTATGCTCGCGTGTGGTGGCCAGCTAACGGGTTCCGCCCAAAACTGACAGATGGCAGCACCATCGTCACCCACCGCCCACAGGGCAAGATCGAGTCTCCTGCTCATGCGTTCTTCGCTGACAAGACACGATCCTGTCAGGCCGTGGTAATTACCCCTCCAGATATGCCCGTGGCTCAAGGTGTGGAGATGCGCTTCATGGTGTCCGGCGAGAACGCTGGCAACACCCGGTGGCGCATCGAGACTGCACTGCAAGGCCCCGGTGAGTTCCAAGCGGACTTCACCAACCCGGTGGAGTTCACGGTGGCTGTACGTCCGCAAGACGTTACCCACTATCGCTCCGTGTTCCCGATGCCCGCAGCGGACATCAGCCAAGTGCTGTACATCCGCGTGAGCCGGGTTCCACAACACCCCGAGGATACGCTGGCAACCTCCAGTGAGGACGCCTTCTTCCTCGGGATCGCCCTTAACTACGTCGCTGAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ea99485355bb0ff0e6731177466f654ff1006afddf66b2cfdb9a97d0b4599981
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7586
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Djurhuus,A.M., Carstens,A.B. and Hansen,L.H. 1991 — GenBank