Protein

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Genbank accession
BBA65380.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MTDYNVKFTNKNKTPITISESNVNNSSTDISLFGRKRLEYGRDMNANFLHILENFACEENPLLPGAPDLTKTSFIADTTKRLLSTPVEGQLWYNTTQESLFVFNGGSWVALGMVGDIAANWGVIAHGSQLPRPVNQHGYIFDYSECSWIVSPFVFDSTFTYMQCLTDENANVTMFYNPEGSGTPTYGCANYLIVGIKGNVNLGTQLPIPSATPAPSPTPTPTPTRTSTPVVSPTPSVTPTPGVSATPTPTVTRTSTPAPSATPTPSKINYALSISASPSGNILPGAQVCYTITLNNPAPPAGYSFTLTRSGDYNGVCASTDGTLVGPLLDQTAGFIPPNQSSVQICKNAPMPATPTPTPTATPRTACLIVPGVTPDNGFNGGYCSGFMCATSPGGALVYFTNSSGGSGNYNQCTTYCACNTAQSFTSTQTIAINPVRNNTQYYNATPANHFNIRVNIAGVGSTNYSRTVYGTTAQTVTDTIYVGSRAFTITMHMTPTLVASSGSNRTWQIVSDYIVVDNERGTQLSFC
Physico‐chemical
properties
protein length:528 AA
molecular weight: 56085,08980 Da
isoelectric point:5,95681
aromaticity:0,09280
hydropathy:-0,17140

Domains

Domains [InterPro]
DC_1317
STR
85–305
DC_1317
BBA65380.1
1 528
Architecture
STR
STR 85-305 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BBA65380.1
1 528
Domain Start End Length (AA) Confidence
N-terminal 1 115 115 0,6252
Central domain 116 385 271 0,7014
C-terminal 386 528 142 0,9295
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-115
Central
116-385
C-terminal
386-528

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XacN1
[NCBI] 		2042251 No lineage information
Host Xanthomonas citri
[NCBI] 		346 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BBA65380.1 [NCBI]
Genbank nucleotide accession
AP018399 [NCBI]
CDS location
range 124048 -> 125634
strand -
CDS
ATGACTGACTACAACGTTAAATTTACCAATAAGAACAAGACTCCGATTACCATTTCAGAGTCCAATGTCAACAACTCAAGCACTGACATTTCGCTATTCGGTAGAAAGCGTCTAGAGTACGGTCGTGACATGAATGCGAACTTCCTCCACATTTTGGAGAACTTCGCTTGTGAAGAAAACCCACTACTACCCGGCGCTCCGGACCTAACCAAGACCTCATTCATTGCTGACACAACCAAGCGTCTACTATCGACGCCGGTTGAAGGTCAACTTTGGTACAACACCACTCAGGAATCGCTATTCGTTTTCAACGGCGGTTCATGGGTTGCTCTGGGTATGGTCGGTGACATTGCCGCCAATTGGGGCGTAATCGCCCACGGTAGCCAGCTACCTCGTCCGGTCAATCAGCACGGTTACATTTTCGATTACTCGGAATGTTCGTGGATTGTCTCGCCATTCGTATTCGACAGCACATTCACTTACATGCAGTGTTTGACAGACGAAAACGCCAATGTAACTATGTTCTACAATCCGGAAGGAAGTGGAACACCAACCTATGGTTGTGCGAACTACCTGATTGTCGGCATTAAAGGTAATGTCAACTTGGGTACTCAGTTGCCGATTCCGTCTGCAACTCCGGCTCCATCGCCAACCCCTACACCGACACCGACTCGTACAAGTACGCCGGTCGTGTCACCAACGCCGTCTGTCACTCCGACTCCGGGTGTGTCTGCGACTCCGACGCCTACTGTCACTCGCACAAGCACTCCGGCTCCGTCCGCGACTCCGACGCCAAGCAAAATCAACTACGCACTAAGCATTTCTGCCAGCCCATCAGGCAACATCCTACCGGGCGCTCAGGTTTGCTACACCATTACGCTGAACAACCCGGCACCGCCTGCGGGTTACTCGTTCACCCTAACACGTTCGGGTGACTACAACGGCGTGTGTGCAAGCACTGATGGTACGCTAGTTGGTCCGCTACTAGACCAGACTGCGGGATTCATTCCGCCGAACCAGTCAAGCGTCCAGATTTGTAAGAACGCTCCGATGCCAGCTACACCAACTCCGACACCTACAGCTACACCACGAACAGCTTGTTTGATTGTTCCGGGTGTAACTCCGGACAACGGATTCAACGGCGGCTACTGTTCTGGATTTATGTGTGCAACTTCTCCGGGTGGCGCACTTGTATACTTCACTAACTCATCTGGCGGTAGTGGTAACTATAACCAGTGTACTACGTACTGTGCATGTAATACTGCTCAAAGCTTTACATCGACTCAGACCATTGCTATCAATCCGGTTCGAAACAACACGCAATACTACAATGCGACCCCGGCTAATCACTTCAACATTCGTGTGAACATCGCGGGTGTTGGTTCTACGAACTACAGCCGCACGGTGTATGGTACGACTGCACAAACAGTGACCGATACAATTTACGTTGGTAGCCGTGCATTTACTATCACAATGCACATGACCCCAACGCTAGTTGCCAGCAGCGGTAGCAACCGTACATGGCAGATTGTGTCCGACTACATTGTTGTTGATAATGAACGCGGAACTCAACTAAGCTTCTGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bf0f8e654542663d0062e2dc1419ebc5e224735bdc1928a2b2cb578380bcfe86
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4549
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Xanthomonas citri jumbo phage XacN1 exhibits a wide host range and high complement of tRNA genes Kawasaki,T., Yoshikawa,G., Ogata,H. and Yamada,T. 2018 29540765 GenBank