Protein

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Genbank accession
BDD79349.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,98
Protein sequence
MYTFVRALAVQPGTNKRWSVVDISTALTSTLLTKYRQIYVVLTDGITDTELTLDLENVAAGIQANVGTISDYLTANGNKTLPTVVGSPVIVRNNAIFSDLWEADFWADSIDYMVGAGVELTQEQKPHVVVKPDNPGDQQGFDYVSMRSKILPNVNGFYHNSAADSKGYYIIDGNKSRMKSGANQLGLLSFATFGTFDIHAITPDMLSFDLNPDTGLVDKVHIEFTECDLCVKTPILILGGYMLLPDNDQVLLTNTNVLTFKTFKYPFLERYFESEPYLDFSAFNIQHQVDNPNWVIAQQFKSQAYLQNYFTMSQSFMVLLDTSNLVVERTYPEKQTVPHTFMSWEEPKWPLVTGEGKHEVYWSQYEAGGWLLRCHDTFKRNYLFNTVGSDDRVAVDNQMWMGKAGTLGDAMFVKLIEEEIQIQVA
Physico‐chemical
properties
protein length:425 AA
molecular weight: 47998,77570 Da
isoelectric point:4,76324
aromaticity:0,12000
hydropathy:-0,16118

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDD79349.1
1 425
Domain Start End Length (AA) Confidence
N-terminal 1 69 69 0,4186
Central domain 70 268 200 0,2015
C-terminal 269 425 156 0,9740
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-69
Central
70-268
C-terminal
269-425

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage FLC8
[NCBI] 		2906466 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Burkholderia glumae
[NCBI] 		337 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDD79349.1 [NCBI]
Genbank nucleotide accession
LC667450 [NCBI]
CDS location
range 68215 -> 69492
strand -
CDS
ATGTACACCTTCGTTCGTGCTCTCGCCGTTCAACCCGGCACAAATAAACGCTGGTCCGTTGTCGATATCTCGACTGCACTGACGAGCACTCTCCTGACCAAATACCGCCAGATCTACGTCGTCCTGACGGACGGAATCACCGACACGGAATTGACGTTGGATCTGGAAAACGTTGCTGCTGGCATCCAGGCCAATGTGGGGACGATTTCAGACTATCTGACCGCGAATGGCAATAAAACTTTACCTACGGTTGTAGGTAGTCCGGTCATCGTTCGAAACAACGCAATCTTCAGTGATTTGTGGGAAGCTGACTTCTGGGCAGACTCCATCGACTACATGGTCGGAGCAGGTGTGGAGTTGACTCAGGAACAGAAACCGCACGTGGTTGTGAAGCCCGACAATCCCGGCGATCAGCAGGGTTTCGACTATGTGTCGATGCGCTCGAAGATCCTGCCCAACGTGAATGGTTTCTACCATAACTCGGCAGCTGACTCGAAAGGCTATTACATCATCGACGGTAACAAGTCGCGGATGAAGTCAGGTGCGAATCAACTGGGTCTTCTGTCGTTCGCTACTTTCGGTACGTTTGACATCCATGCGATCACGCCTGACATGCTGTCGTTCGATCTGAACCCGGATACGGGTCTGGTCGATAAGGTCCACATCGAATTCACCGAATGCGATCTGTGCGTAAAGACGCCCATCCTGATTCTCGGCGGCTACATGCTCTTGCCGGATAACGATCAGGTGTTGCTCACCAATACGAACGTGCTGACATTCAAGACGTTCAAGTACCCGTTCCTGGAACGTTACTTCGAGAGCGAGCCGTATCTGGACTTCTCGGCGTTCAACATCCAGCATCAGGTCGACAATCCGAACTGGGTGATCGCGCAGCAATTCAAGTCGCAGGCTTACCTCCAGAACTACTTCACCATGAGCCAGTCTTTCATGGTGTTGCTCGATACGTCGAATCTGGTGGTCGAGCGTACCTATCCGGAAAAGCAAACCGTTCCCCACACGTTCATGTCGTGGGAAGAACCCAAGTGGCCTCTGGTCACGGGGGAAGGCAAACATGAAGTCTACTGGTCGCAATACGAGGCTGGTGGCTGGTTGCTCCGCTGCCACGACACATTCAAACGAAACTATCTGTTTAACACTGTTGGCTCGGATGATCGGGTAGCAGTGGATAACCAGATGTGGATGGGTAAAGCAGGGACATTGGGCGACGCCATGTTCGTGAAACTCATCGAAGAAGAGATTCAGATCCAGGTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a5dca439759b1989a15bffd9cfde59862825e60418c06adf1b9ac1023a14c719
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2778
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Optimal preservation method of new biocontrol agent Burkholderia jumbophages having a potential suppressing rice seedling rot disease Kanaizuka,A., Sasaki,R., Miyashita,S., Ando,S. and Takahashi,H. 2022-11-19 — GenBank