Protein

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Genbank accession
YP_009832536.1 [GenBank]
Protein name
colanic acid degradation
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MLQSVKISELPSATTLTEDDLIVVDQPDNTKKATLFQVFSHLEDTVEQSVLAALAQPDGASKVGLPKGGTVADAIYWVTLEMFGAKGDGVYDDAIAFQAAVNFAESINSGTTTRAPRVGIRFAAKKYYLKQTVKVTKGTVYWEGSGMYQTVFTPHPEANSSELQYKYFFDFSSPSWVSNATRTLFEVHLRNFTFLGDGVTLRPVFYLGGVGWDCVFDTVHVWSAGLSAIVADDLFDTQFYNLRINSCGNLHNPANASDIFTHPIMFRGKYDNCNAIRFIAPHFENNLTGVISITGRSNNIAFTSMPKFENNSRGAASGAKYPVVSINGTLAESIKIDNPFVSHPANITEWFIESNSRHLSLRGGSYMSPSDTSGQTAKKWFRIHRDNWVSATRCVGAVIDIDMMHVNGLGDNGVAPISIENDAVVNIKAPRVADPNRFIDILYDCQVTIDDLTVLGTITAANQTALFNVTGSSVKADITVKQQQGAVTGLIHVNADMTTESRRKSKIVLKLQNNQNAVGSLVSGYDPIGIDEGYVFQASGLVSSLGYCHTGKKMVVRCPDTANRLVTGGNIFLPGGAVTAACTITLMATNFAFRQGWTEISRVNGV
Physico‐chemical
properties
protein length:606 AA
molecular weight: 65839,63400 Da
isoelectric point:6,23731
aromaticity:0,09571
hydropathy:-0,05215

Domains

Domains [InterPro]
DC_1918
ATT
1–262
DC_1918 DC_0612
IPR011050
STR
73–421
IPR011050
IPR012334
STR
80–374
IPR012334
YP_009832536.1
1 606
Architecture
ATT
STR
RBD
ATT 1-262 | STR 263-421 | RBD 422-606
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009832536.1
1 606
Domain Start End Length (AA) Confidence
N-terminal 1 93 93 0,9833
Central domain 94 506 414 0,9743
C-terminal 507 606 99 0,9854
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-93
Central
94-506
C-terminal
507-606

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KpnM_BIS47
[NCBI] 		1907784 Uroviricota > Caudoviricetes > Vequintavirinae > Mydovirus BIS47 >
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009832536.1 [NCBI]
Genbank nucleotide accession
NC_048656 [NCBI]
CDS location
range 19743 -> 21563
strand -
CDS
ATGCTACAGAGTGTTAAAATTTCAGAGTTGCCAAGTGCGACCACTCTAACAGAAGATGACCTGATCGTAGTTGATCAACCAGACAATACAAAGAAGGCAACTTTATTTCAAGTTTTTAGCCACCTTGAAGATACCGTTGAACAGTCGGTGCTGGCGGCTTTGGCCCAGCCTGATGGAGCGAGTAAGGTGGGTTTACCGAAAGGAGGTACGGTTGCAGACGCCATTTACTGGGTCACTCTTGAAATGTTTGGAGCCAAAGGGGACGGTGTTTACGACGACGCAATAGCATTCCAGGCCGCAGTAAATTTTGCTGAGTCAATTAACAGCGGAACCACCACTCGCGCCCCACGCGTAGGGATCAGGTTTGCGGCTAAAAAATACTACCTAAAACAAACGGTAAAAGTCACAAAAGGTACTGTGTACTGGGAAGGGTCAGGGATGTATCAGACCGTATTCACTCCGCACCCAGAAGCAAATTCTTCTGAGCTGCAATATAAGTACTTCTTCGATTTCTCCAGCCCATCATGGGTAAGCAACGCCACAAGAACCTTATTTGAAGTTCACCTGCGAAACTTTACTTTCCTGGGTGATGGCGTTACTTTACGCCCGGTGTTTTATCTGGGTGGTGTTGGTTGGGATTGTGTTTTTGATACGGTACATGTATGGAGTGCTGGGCTTTCTGCTATCGTTGCTGATGACCTTTTTGATACTCAGTTCTATAACTTACGTATCAACAGTTGTGGTAATCTACATAATCCAGCTAATGCTAGTGATATCTTTACACATCCCATCATGTTCAGAGGGAAATACGATAACTGCAACGCTATCAGATTCATTGCACCTCATTTTGAGAACAACCTTACTGGCGTTATTTCGATTACTGGGCGGTCAAACAACATCGCATTTACATCTATGCCTAAATTTGAGAATAACTCTAGAGGTGCGGCTTCTGGAGCTAAATACCCAGTCGTATCCATCAATGGCACGTTGGCAGAATCTATCAAAATAGATAATCCGTTTGTCAGCCACCCGGCGAACATCACCGAATGGTTTATTGAAAGCAACTCGCGTCATTTATCATTACGCGGTGGTTCTTACATGAGTCCTTCGGATACTTCAGGGCAAACTGCAAAAAAATGGTTCAGGATACACCGTGATAACTGGGTTTCTGCAACTCGCTGCGTGGGTGCCGTTATCGACATCGACATGATGCATGTCAATGGACTAGGTGATAATGGGGTTGCTCCGATTAGTATCGAAAATGATGCCGTAGTGAACATTAAGGCACCGAGAGTGGCAGACCCAAACAGGTTCATTGATATTCTATACGATTGCCAAGTGACCATCGATGACCTGACAGTGCTTGGAACTATTACAGCAGCAAACCAGACTGCCTTGTTTAATGTCACTGGTTCAAGTGTCAAGGCTGACATTACAGTCAAACAGCAGCAGGGGGCGGTTACAGGCTTGATTCATGTTAATGCTGATATGACTACCGAGTCACGGAGAAAATCCAAGATTGTACTGAAGTTACAAAACAATCAGAACGCCGTTGGCTCACTGGTTAGTGGATACGACCCCATTGGCATAGATGAGGGATACGTTTTCCAGGCCAGTGGTTTAGTTAGCAGCCTTGGTTACTGCCATACTGGTAAGAAGATGGTTGTTCGTTGTCCTGATACGGCAAACCGCCTGGTTACGGGCGGGAATATATTCCTACCTGGTGGTGCAGTAACTGCGGCGTGTACGATAACTCTCATGGCGACAAACTTTGCGTTTCGTCAGGGGTGGACTGAAATTTCAAGAGTGAACGGGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2966c5171742455b4e227aba859a6999b82ad7a42ac2fc43eee2d7cf1a734df9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7778
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequencing and assembly of Klebsiella pneumoniae phages Labudda,L., Strapagiel,D., Karczewska-Golec,J. and Golec,P. 2017-11-09 — GenBank