Protein

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Genbank accession
YP_010667509.1 [GenBank]
Protein name
concanavalin A-like lectin/glucanase superfamily protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSSTNQFPYAFAGTKVKMPYLGAGYIAGEAPPPLVPDHPDGRTYVDYQIKPLVVKVLHADSFTPIAEVKSLLDGTWRIEGLDPAQRYQVIFQNDTYRDSSNTLYNSFIQDWISAVPMTYVAPPDELLMSVPLVMDRWAMPTTIQAWSVNGGVLTTPTFSGSFTGVTVEANKTSVNVRLVPVQQIGTYTLQVSAVKDSNTITTRLRTFKIRPQQVDTQQFVRFALLGTAAGPASAISTWNRALNNNGTLTNGTFIADADALSSDYPVSLNSDWSADIISGGMYNDGAGNWISLNNGYNNGVTVEGWFNVSTWPTTDSAMLTSIQTSNSGSSLIGLTLLPSKRIGTIMKYGSTNSARFENVGDAEYTLPTGEWFHVLVHIPPSQSDGYLYINGQYVDKWSMIKRNTVPTNTNLTIGYVTFMCNNGQGCTGTAVAKCNRVVWLESRFSNQNFTPSKNKYHEYQATVQCATYGVNGNAVNEMSSCDGTWNTTGNVSSRPVFDPVEGVVFPNTTATDGYAWINISRGYGGVKGSFCLDVWFKPLTAYNGDKNIIQLGNSGSADGRMHIALNNGKLKSFCAPYTAATGVTMNGTTVLNNNQWYLATLCCDVIQREWRLYLDGTLEASIADPTLAPLALPATSSLIQIILGGRHPLNNSGSGTIPSFHGVIGATRLTVNGPRYYSGFTPTGIGAWDALPARPAA
Physico‐chemical
properties
protein length:697 AA
molecular weight: 75522,02210 Da
isoelectric point:6,26124
aromaticity:0,10330
hydropathy:-0,15280

Domains

Domains [InterPro]
DC_0739
ATT
1–245
DC_0739 IPR013320 G3DSA:2.60.120.200
G3DSA:2.60.120.200
STR
243–437
G3DSA:2.60.120.200 IPR013320
PF13385
LEC
285–415
PF13385 IPR013320
PF13385
LEC
515–631
PF13385
YP_010667509.1
1 697
Architecture
ATT
STR
STR
ATT 1-245 | STR 246-437 | STR 465-670 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010667509.1
1 697
Domain Start End Length (AA) Confidence
N-terminal 1 217 217 0,7635
Central domain 218 416 200 0,3706
C-terminal 417 697 280 0,7745
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-217
Central
218-416
C-terminal
417-697

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas maltophilia phage vB_SmaM_Ps15
[NCBI] 		3071007 Uroviricota > Caudoviricetes > Menderavirus >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010667509.1 [NCBI]
Genbank nucleotide accession
NC_070951 [NCBI]
CDS location
range 19312 -> 21405
strand +
CDS
GTGAGTAGCACAAATCAATTTCCATACGCTTTTGCCGGCACAAAGGTGAAGATGCCCTATCTTGGTGCCGGCTATATCGCTGGCGAAGCGCCACCTCCGCTTGTACCTGATCATCCGGATGGCAGAACCTATGTCGACTATCAGATCAAGCCTCTGGTTGTCAAGGTCTTGCACGCCGACTCGTTCACTCCAATCGCTGAGGTGAAGTCTCTTTTGGATGGTACATGGCGCATTGAAGGTTTGGATCCAGCGCAGCGATATCAGGTGATCTTCCAGAACGACACATACAGGGACAGTAGCAACACGCTATACAACTCCTTCATCCAGGATTGGATTAGCGCTGTCCCTATGACCTATGTGGCACCTCCAGACGAACTATTGATGTCTGTGCCTCTTGTGATGGATCGATGGGCTATGCCGACCACTATCCAGGCTTGGTCTGTCAATGGTGGAGTGTTGACAACTCCTACCTTCTCCGGCTCATTCACTGGGGTGACGGTCGAAGCCAACAAGACCAGCGTGAATGTGCGGCTAGTACCTGTGCAACAGATCGGTACGTATACCTTGCAGGTATCGGCTGTCAAGGATTCAAACACTATCACGACTAGATTGAGAACCTTCAAGATCAGACCACAGCAAGTGGACACGCAGCAATTCGTCCGCTTCGCTTTGCTTGGCACGGCGGCAGGTCCGGCTAGCGCCATCTCCACTTGGAACCGTGCGTTGAACAACAATGGCACCTTGACAAATGGAACGTTCATTGCAGATGCAGACGCGCTGTCGTCAGACTATCCGGTGTCCCTGAACAGTGACTGGTCGGCTGATATCATCTCTGGTGGTATGTACAATGATGGTGCAGGTAACTGGATCTCGCTGAACAACGGTTACAACAACGGAGTCACAGTCGAGGGATGGTTCAATGTGTCGACTTGGCCTACCACTGATTCGGCTATGCTTACGTCGATCCAAACATCCAATTCTGGGTCATCGCTTATCGGCTTGACTCTTTTGCCGTCTAAGAGAATCGGCACTATCATGAAGTATGGCTCGACTAACTCGGCTAGGTTCGAGAATGTGGGTGACGCTGAGTACACGCTGCCGACTGGAGAGTGGTTCCATGTGCTGGTTCATATCCCACCCAGCCAGTCTGACGGCTATCTGTACATCAACGGTCAGTATGTGGACAAGTGGTCGATGATCAAGCGGAACACAGTTCCTACCAACACCAACCTGACCATCGGCTATGTCACCTTCATGTGCAACAACGGTCAGGGCTGCACAGGCACAGCTGTGGCCAAGTGCAACAGGGTTGTGTGGCTTGAGAGCCGATTCTCTAACCAGAATTTCACTCCGTCAAAGAACAAGTATCACGAGTATCAAGCCACCGTCCAATGTGCCACCTATGGAGTCAACGGCAACGCTGTGAATGAGATGAGCTCTTGCGATGGCACATGGAACACGACTGGTAATGTATCATCAAGACCTGTGTTCGATCCAGTCGAGGGTGTGGTCTTCCCGAACACAACAGCGACAGATGGATATGCTTGGATCAACATCTCGCGCGGTTATGGTGGTGTCAAGGGTTCATTCTGTCTGGATGTATGGTTCAAGCCTCTGACAGCATACAATGGTGACAAGAACATCATCCAGCTGGGTAATTCTGGCTCAGCTGATGGTCGTATGCACATCGCCCTGAACAATGGTAAGCTGAAGTCGTTCTGTGCGCCATACACAGCTGCGACGGGTGTCACCATGAACGGGACGACGGTGCTGAACAACAATCAGTGGTATCTGGCCACCTTGTGCTGCGATGTGATCCAGCGCGAGTGGAGACTCTATCTGGATGGTACGCTTGAGGCTAGCATCGCTGACCCCACGCTTGCACCGTTGGCATTGCCGGCTACCTCGTCTCTGATCCAGATCATCTTGGGTGGTCGTCACCCACTGAACAACTCGGGTAGCGGAACGATCCCATCGTTCCATGGCGTCATCGGTGCAACACGATTGACTGTCAATGGTCCTCGCTACTACTCCGGCTTTACGCCTACCGGCATCGGCGCATGGGATGCACTGCCAGCTCGCCCAGCGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
153dc0159efa092531b65d3d4a953c426a4c2dee28c8c3c8e1b2703d10f60f9f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6037
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of bacteriophage vB_SmaM_Ps15 infective to Stenotrophomonas maltophila clinical ocular isolates Damnjanovic,D., Vazquez-Campos,X., Elliott,L., Willcox,M. and Bridge,W.J. 2020-06-11 — GenBank