Protein

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Genbank accession
YP_010668647.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MEKNMSVDFTIKRDRSILSPFWPAIKIALAKVCDERIAELKNPTEEQIAELRKRYLNPTPTHNSIEPPVVKDGVTYSTITHRINGYARFDVEVHALPFKDLFMDLLPHTKTFTGLYECATVSDMIATAHFHKEKGDYFYVVETDKFYYFARKKLLGNDIYNFPVVTDIIFEKMSGFHFPTSTNPAEDPQRVIIEDSSIEGVGEIVLLSGDKLDEESEQSFLATFPEKVLFNEHDGKVVVDLVLNKKLDFDATRLVGKNLSWPGPALFTNDFVGNLTKVSDTAYTAELEFTLPYQMEALEPSSLVFEVEFSNEGGDKKATSNSTFVFEPTLDPLLFRNDSFIATKAGSFYFKDVGRVTLPQGFMFSLGDDEKITAIPDDWVLKGPFADVGAMTYVEKLGLHHIACRVTGCGNAELAMSFGQRTMVHPFIAGARMRDVSFDFAQTPATDMDPLFSAKLQLTVDHEINHDNFQGLNVTATANPNEPWVAPYEYISDVGSNEHHRIISNPLVRSYGSTERLVASHPGEWFELKAEFKDGEVVTNWVMDLYHQLSVIECRTDLELGDQNKLNLEALVHPNKLNEFYVPDWFFKEGYYNKSLIQVVKTGFVDTPFNNEGQDKVQMSRIVILDRNYVPGDDITITLPVGIIKDGLQYFNVVTVTLTPKVVYPDIACTYSSGERSLVFTPLIGIPYTDEHAIPVTFESVSGVLNNLEFIHEEIPYGQVTDRQSVSLKLRVIDENLPASLIRPVLNFKVRDKEVSIHDQWAHFYYQGLGETRLSQAVQVRKESSGTTSFVMLKKDLPSLLPSVVNLKMPLAGIVEARVEEGTMFAAFHTDVPHGDLWTEPMGNGTYVLEITYPGMDSPVKGNVLKGPPIPPYGKNPGFELASDPEVMEVVLSFQYLWMNDLATSPHDVYVLDLNGKAGRVLHSGPAIHSTAVENSITPIERPYQPLFVSPVGLSGWFIESGQVITHKPPLLTGWVHELAEGEWDHEYFQPWNVVYRNTETGEVVKNTAGNLIEIISYSVNGEPNSPRVKFSQEGVRFTNPARVTPGEKVTVRAKFRAGTWEGEVKPTFVATITLTT
Physico‐chemical
properties
protein length:1077 AA
molecular weight: 120810,56720 Da
isoelectric point:5,04471
aromaticity:0,10678
hydropathy:-0,20167

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010668647.1
1 1077
Domain Start End Length (AA) Confidence
N-terminal 1 442 442 0,7036
Central domain 443 641 200 0,3392
C-terminal 642 1077 435 0,2063
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-442
Central
443-641
C-terminal
642-1077

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage D3
[NCBI] 		2593327 Uroviricota > Caudoviricetes > Chimalliviridae > Ludhianavirus D3 >
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010668647.1 [NCBI]
Genbank nucleotide accession
NC_070957 [NCBI]
CDS location
range 171143 -> 174376
strand -
CDS
ATGGAGAAAAACATGTCTGTCGATTTCACTATTAAACGTGATCGGTCGATTCTCAGTCCCTTCTGGCCGGCGATCAAGATTGCGCTGGCTAAGGTGTGCGACGAGCGTATCGCCGAACTCAAAAACCCGACGGAAGAACAGATAGCGGAATTGCGCAAACGTTATCTGAATCCGACACCCACTCACAACAGTATCGAACCACCGGTGGTGAAAGATGGTGTGACCTACAGTACGATCACCCATCGTATCAATGGTTATGCTCGCTTTGACGTGGAAGTTCACGCCCTTCCCTTCAAAGACCTGTTCATGGATCTGCTACCCCACACTAAAACCTTCACAGGTTTGTATGAGTGTGCAACCGTTAGCGATATGATTGCTACAGCACATTTCCATAAAGAGAAGGGTGATTACTTCTACGTGGTGGAAACTGACAAGTTCTACTACTTCGCTCGTAAAAAGCTTCTCGGTAATGATATTTACAACTTCCCTGTTGTGACCGACATCATATTCGAGAAGATGAGTGGTTTCCACTTCCCTACTTCCACTAATCCCGCTGAAGATCCCCAGCGTGTTATTATCGAAGATAGTTCCATCGAGGGTGTGGGCGAAATCGTACTCTTGTCTGGTGATAAACTGGATGAAGAAAGTGAACAATCATTCCTGGCCACGTTCCCTGAAAAAGTTCTTTTCAATGAGCATGATGGTAAAGTGGTCGTTGATTTGGTTCTGAACAAGAAGCTTGACTTCGACGCTACGAGACTGGTAGGTAAAAATCTGTCTTGGCCGGGACCGGCTCTTTTCACCAATGACTTCGTCGGTAATCTGACCAAAGTCAGCGATACCGCGTATACGGCCGAACTGGAGTTCACGCTCCCTTATCAAATGGAAGCCTTGGAACCTTCGTCCCTGGTATTCGAAGTCGAATTCTCTAATGAAGGAGGCGACAAGAAAGCAACTTCCAATTCCACGTTTGTCTTCGAACCCACCTTGGATCCGTTGCTTTTCCGTAATGATTCGTTCATCGCAACTAAAGCAGGGTCGTTCTACTTTAAAGATGTGGGTCGTGTAACTCTTCCTCAAGGGTTCATGTTCTCGCTGGGCGACGACGAAAAGATCACTGCGATTCCGGATGATTGGGTGCTTAAAGGACCGTTCGCAGATGTCGGTGCAATGACCTACGTGGAGAAGTTGGGTCTTCATCACATCGCTTGTCGAGTTACCGGTTGTGGCAATGCCGAACTCGCGATGTCATTTGGGCAACGGACCATGGTCCACCCGTTCATTGCTGGTGCACGGATGAGGGACGTCTCCTTCGATTTTGCTCAAACACCCGCAACTGATATGGATCCCCTGTTCTCAGCGAAACTTCAACTGACCGTTGATCATGAGATCAACCATGACAACTTCCAGGGTCTGAACGTTACAGCGACAGCTAATCCCAATGAACCTTGGGTGGCTCCGTATGAATATATTTCAGACGTCGGTAGTAACGAACATCATCGGATTATCTCTAATCCCTTGGTCCGTTCTTACGGCAGTACGGAACGTCTGGTAGCCTCGCATCCAGGTGAGTGGTTCGAACTGAAAGCCGAGTTCAAAGATGGGGAAGTCGTGACTAACTGGGTCATGGATCTCTATCACCAACTTTCTGTTATCGAATGTCGGACAGACCTTGAACTTGGTGACCAGAACAAACTCAATCTGGAAGCGCTTGTTCACCCCAACAAGCTCAATGAGTTCTACGTCCCCGATTGGTTCTTTAAAGAAGGGTATTACAACAAGAGTCTCATTCAAGTAGTGAAGACTGGGTTTGTCGACACACCCTTCAATAATGAAGGACAGGATAAAGTCCAAATGTCCAGAATCGTGATCCTGGACAGAAACTATGTTCCCGGTGACGATATCACCATCACACTCCCCGTGGGGATCATTAAGGACGGACTCCAGTATTTCAACGTTGTCACTGTCACTCTCACTCCTAAAGTGGTTTATCCCGACATCGCGTGCACTTATAGTTCCGGTGAACGTTCATTGGTATTTACACCGTTAATCGGTATTCCTTACACTGATGAACATGCCATTCCTGTCACTTTCGAAAGTGTAAGTGGTGTTCTCAATAACCTGGAATTTATCCATGAGGAAATACCTTATGGCCAGGTGACTGACCGACAGAGCGTCAGTTTGAAACTCCGGGTGATCGATGAAAATCTTCCGGCTTCGTTGATCCGACCTGTTCTGAACTTCAAAGTCCGAGACAAAGAAGTATCAATCCATGATCAGTGGGCTCACTTCTACTATCAAGGTTTGGGCGAAACTCGTCTTTCCCAAGCGGTTCAGGTCAGGAAAGAGTCCTCCGGGACAACAAGCTTCGTGATGTTGAAGAAAGATCTGCCCTCCTTACTTCCTAGTGTTGTCAACTTGAAAATGCCTTTGGCCGGGATTGTTGAGGCGAGGGTTGAGGAAGGAACGATGTTCGCAGCGTTCCACACAGATGTCCCCCACGGTGACCTGTGGACAGAACCCATGGGTAATGGGACCTATGTTCTGGAAATCACATACCCAGGTATGGATAGTCCCGTAAAGGGTAACGTTCTTAAAGGACCTCCCATTCCTCCTTACGGGAAGAATCCTGGGTTTGAGCTGGCAAGCGATCCGGAGGTCATGGAGGTAGTTCTCAGTTTCCAATATCTCTGGATGAACGATTTGGCCACGAGTCCTCACGATGTGTATGTACTCGACCTTAACGGTAAGGCCGGTCGTGTTCTCCATAGCGGACCCGCAATCCACAGCACCGCAGTAGAGAACAGTATCACTCCGATCGAGCGTCCTTATCAGCCGCTGTTTGTGAGTCCGGTCGGTCTCTCTGGATGGTTCATCGAATCAGGTCAAGTAATTACTCACAAACCCCCACTCTTGACTGGCTGGGTGCATGAACTGGCTGAAGGCGAATGGGACCACGAATATTTCCAACCCTGGAACGTCGTGTATCGCAATACAGAAACCGGAGAGGTTGTCAAGAACACCGCCGGAAACTTGATCGAAATCATCAGTTACAGTGTAAATGGTGAGCCCAATAGCCCTCGGGTGAAATTCAGTCAAGAAGGTGTGCGGTTCACAAATCCTGCTAGGGTGACACCTGGTGAGAAGGTTACCGTTCGTGCCAAGTTCCGTGCAGGTACTTGGGAGGGTGAAGTTAAACCCACCTTCGTAGCAACGATCACACTGACTACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b24b8dac0b62ab48388e8decd8edbffee6a038f73fa852ad1e88c9f41e6baa7d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2781
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage D3 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-06-10 — GenBank