Protein

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Genbank accession
XZO20779.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARPFEGALNDLLQGVSQQVPRERVAGQCSAQVNMLSDPVTGIRRRPGSLFVSVHDFGPIGEGDALYTQYLERGADGRHLVINTNTGGWWLLDREAKNIVSEGNLSYLLAADRRSIQTTSMGGVTYILNTEKRPSATTDNSDKKDPKTTGFYFVKSGAFSKEYDISVVWSEGSQTVTYTTPDGTTAGDADQSVPEAIARKLVEALIAVGVDFAVRVGPYIYFELITGTDLKITSTSGSPYIGYSNQSQVNLETDLPARLHPSADGALCAVGQSERALVWYRYSAEKGVWLESGDYNSVTAISVDVPYKIVDDNMEQHIMEGRLAGDDLTNPAPTFLEERRITGIGTFQGRLVLLSGAYVCMSATGEPDRFFRSTVSSLDPTDRIDIASGSAQNSVFRQALQFNKDLILLGDSTQAVVPSLQQLLAPDNASVVLTSDLACNAFVAPVTTSQTLMYPAPRSEAFSAVLELVPSQYTSSQYVSQDVTTHIPRYIEGEARFMQSASAANIVLMATTGDNRQVIAHEYHFTSQGKVHQAWHKWVFPYRVASLHFARDRVVLFAADDAGSTDKITISTIDPKQGGVTFDVDRLPHLDSMSIVPVNDGKGIVPIYMRPWVSEGKLTGSVATGALASEEVAIDVDEVSWEFTVEPGFKDSQIYLGFRYESLFAPTPPMLKDQNDTLISTAPVRLLRYELTTRNTGEFDVRIVDPTIGLDYSNSKTSLVFGTDDVQLNQALVSDLARVPVPCRSNAQSTEMYLSTDGTQDMNIIEIEYIIRYNQRRRRV
Physico‐chemical
properties
protein length:780 AA
molecular weight: 85608,01100 Da
isoelectric point:4,90222
aromaticity:0,08590
hydropathy:-0,20538

Domains

Domains [InterPro]
DC_0058
STR
1–780
DC_0058
IPR058003
TTP
9–780
IPR058003
XZO20779.1
1 780
Architecture
STR
STR 1-780
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XZO20779.1
1 780
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9935
Central domain 142 340 200 0,0640
C-terminal 341 780 439 0,2265
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-340
C-terminal
341-780

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPpYZU81
[NCBI] 		3385168 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XZO20779.1 [NCBI]
Genbank nucleotide accession
PQ581935 [NCBI]
CDS location
range 5272 -> 7614
strand -
CDS
ATGGCTCGACCATTTGAGGGTGCATTGAATGACCTGCTACAAGGTGTGTCCCAACAAGTTCCACGTGAGCGTGTGGCTGGACAATGCTCTGCGCAAGTTAACATGCTGTCCGACCCAGTAACAGGCATCCGTCGTCGTCCCGGTAGTCTGTTCGTGAGTGTGCACGATTTCGGCCCGATTGGTGAGGGTGATGCACTGTACACGCAGTATCTCGAACGAGGTGCTGATGGACGACACTTAGTAATCAACACCAACACAGGCGGCTGGTGGCTCTTAGACCGTGAGGCTAAGAACATCGTGAGCGAGGGCAACTTGTCCTACCTCCTAGCGGCTGACCGTCGCAGTATCCAAACTACCAGTATGGGCGGTGTCACGTACATCCTTAACACTGAGAAGCGTCCGTCTGCAACGACTGACAACTCTGACAAGAAAGACCCGAAGACAACAGGCTTCTACTTCGTCAAGAGTGGTGCGTTCAGTAAAGAGTATGATATTTCTGTAGTGTGGTCTGAGGGTAGCCAAACCGTGACATACACCACGCCTGACGGTACAACCGCAGGTGACGCAGACCAATCTGTACCGGAAGCAATCGCACGTAAACTCGTGGAAGCTCTGATTGCAGTTGGTGTGGACTTCGCTGTGCGTGTTGGCCCGTACATTTACTTTGAACTAATCACAGGTACTGACCTTAAAATCACCAGTACGTCAGGTTCGCCTTACATTGGTTACTCAAACCAATCACAGGTAAACCTAGAGACTGACCTCCCTGCGCGTCTGCATCCGTCTGCTGATGGTGCGTTGTGTGCTGTAGGTCAATCAGAGCGTGCGCTTGTGTGGTATCGTTACAGTGCCGAAAAGGGTGTGTGGTTGGAATCTGGTGACTACAACTCCGTGACCGCTATTAGCGTGGATGTGCCTTATAAGATTGTCGATGACAATATGGAGCAACACATCATGGAGGGGCGTCTCGCAGGTGACGACTTAACTAACCCTGCACCGACATTCCTTGAAGAACGCCGCATCACTGGTATCGGTACGTTCCAAGGTCGCTTAGTGCTTCTGTCTGGTGCGTACGTCTGTATGAGTGCCACTGGCGAACCAGACCGTTTCTTCCGTTCTACCGTGAGTTCCCTTGACCCAACAGACCGGATTGATATTGCATCCGGTTCGGCTCAGAACTCAGTGTTCCGCCAAGCGTTGCAGTTCAACAAGGACTTGATTCTACTTGGTGACAGCACACAGGCGGTAGTACCGTCCCTGCAACAGTTACTTGCACCTGATAACGCAAGCGTGGTGTTGACCTCAGATTTGGCCTGTAACGCGTTTGTAGCACCTGTTACAACCTCACAGACCCTGATGTACCCTGCGCCTCGAAGCGAAGCATTCAGCGCAGTTCTGGAGCTTGTACCGTCACAGTACACCTCGTCTCAGTACGTATCTCAAGACGTTACGACTCACATCCCTCGTTACATTGAGGGTGAGGCTCGTTTCATGCAGAGTGCGAGTGCTGCGAACATCGTACTAATGGCAACTACTGGCGACAACCGTCAGGTGATTGCTCACGAGTACCACTTCACAAGTCAAGGTAAAGTGCACCAAGCATGGCACAAATGGGTGTTCCCGTATCGTGTCGCTAGTCTACACTTTGCGCGTGACCGTGTTGTACTGTTTGCCGCAGACGATGCTGGTAGTACTGACAAAATCACTATCTCGACCATCGACCCTAAGCAGGGTGGTGTGACGTTTGATGTTGACCGCTTACCACACCTAGACTCGATGAGCATTGTGCCCGTCAATGATGGTAAAGGTATCGTGCCAATCTACATGCGTCCGTGGGTATCTGAGGGTAAGTTGACTGGTTCTGTTGCTACAGGTGCGTTAGCGTCTGAGGAAGTGGCTATTGATGTGGACGAGGTTTCATGGGAATTCACTGTAGAGCCGGGTTTCAAAGACTCGCAAATCTACTTAGGCTTCCGCTATGAATCACTGTTTGCGCCAACGCCGCCTATGCTGAAAGACCAGAACGATACTCTAATTAGTACTGCTCCGGTTCGGCTGTTGCGTTATGAGTTGACAACTCGAAATACAGGTGAATTCGATGTACGCATCGTTGACCCTACTATCGGGCTAGACTACTCAAACAGCAAAACCAGTCTAGTGTTTGGCACTGACGACGTTCAGTTGAACCAAGCCCTAGTGTCTGACTTGGCACGTGTCCCTGTACCGTGTCGAAGCAATGCACAGTCCACCGAAATGTACTTGAGTACTGATGGTACACAGGATATGAACATTATCGAAATCGAATACATCATTCGTTACAACCAACGCCGACGTCGCGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
03ce1e54d05c662d6de797db8cc43274367d271765692a92a449cf24bb1277be
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8987
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50