Protein

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Genbank accession
UYM28901.1 [GenBank]
Protein name
long tail fiber proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,71
TF
Evidence RBPdetect2
Probability 0,55
Protein sequence
MADILKPAFRATSGLDAGGEKVINVSKADFNTKTDGVNVEFFIEENTIQEYDSTRGYRKNFAVMFDGRIWTAKEDIAAPAGTFQEPRWTALRTDAKWKYVTSGANNALKSGDYISVSTETSDVGFVLPNTPQDGDTIVIKDVGGKVGYNSLKVKISNQSIIRFNVPVSEVIITKARAESIFIFSNRQWQFYSYEEDEHAIRVTSAAEHRATAGEHIFRTHANPGLVKVMLPKFANNGDIIYFTDLDGLGPIHHLQLRTFDDSTSIGKAGVHQAEYRTSGDGLVVFDAAEKVWRTWDGDLRTRLRIIRDDVKLMPNESVMVIGTNNAIEKTINVELPLSVALGDKVRIAMNYMRKGQKVVIKAAEGDTIATSKSLLQFPKRSEYPPEVEWVQVTSLTFDGTQDYVPIIELSYIEDGTKHYWVVSTNDPTVERVDSKTDETRKRLGVIALASQTQANVDKENNPEKELAITPETLANRTSTESRRGISRLATTAEVVQDSNFAFLDDVIVTPKKLNQRVATETSRGLAEIATQTETNQGTDDTTIITPKKLEARRATENMAGIAKLVSTVGTTAGVDRATKGTNVYDYDNNTDIVTPKSLAQQKATYTEQGSLFIATANEVISGVSQEGFQTAVTPVELHKKTATETRIGFSELATQAETDAGTDDFRIVTPKKLNDRKAREDLTGLARIATQVEFDAGTLDNVISTPLKVKTHFNDTARTSVVTDSGLVEQGTLWNHYTLDIQEASETQRGTARLATQGEVDTGTDDKTVVTPLKLHKKKATESSEGIVKIATQVETVAGTSSITAVSPKNLKHVIQVEKTWEASPVLRGLVKISENAITWEGNNVDGSTKPLENYEKSGYAISPYELNKTLANYLPKMGQAEDSRNLDGLDSSQFIRRDIDQTVNGKLTLTKETTVSAPIVSTSTAKFDSVTSVKSVTIGDGTGDAVFNMLGKDNPWNVSSLTSKETLEFKSGDTNALVINKNGNLTSAGQIAAPSVDVSKSYKLNGVNVLTSETIGVTPVVSVGSTTQKLVIKTVDAGKIDIYDKDSPSTPYTVLTTKNAVDIVGNNFVKKIGDNMSGRLTVNAAMSIIMDQDKAMLPLSSETIGTWSTEITKKTHYDKLPGYVVPVFVEGEEGGSTGIVERYEEVKSIGTMSQFGVSAAYTYRIWTPRPQVPQDNHNAVSMYMQMWDSARNTWGQWSRMFTSEAPPTAADIGAVSTAGSAFDNLKIHKWLQIGNVRIEPDETTRTVKFTWVDNP
Physico‐chemical
properties
protein length:1256 AA
molecular weight: 137517,53460 Da
isoelectric point:5,47151
aromaticity:0,06927
hydropathy:-0,38869

Domains

Domains [InterPro]
DC_1986
ATT
10–138
DC_1986 DC_1209
IPR048391
ATT
1103–1202
IPR048391
UYM28901.1
1 1256
Architecture
ATT
STR
ATT
STR
ATT 10-138 | STR 343-1102 | ATT 1103-1202 | STR 1203-1244 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYM28901.1
1 1256
Domain Start End Length (AA) Confidence
N-terminal 1 1017 1017 0,8054
Central domain 1018 1216 200 0,1082
C-terminal 1217 1256 39 0,6339
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-1017
Central
1018-1216
C-terminal
1217-1256

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage vB_SspM_LC53
[NCBI] 		2989509 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYM28901.1 [NCBI]
Genbank nucleotide accession
OP617331 [NCBI]
CDS location
range 153179 -> 156949
strand +
CDS
ATGGCCGATATTTTAAAACCTGCTTTCCGTGCCACGTCCGGCCTTGATGCAGGTGGCGAAAAAGTTATCAACGTTTCTAAAGCTGATTTCAATACAAAAACTGATGGTGTAAACGTTGAATTCTTTATTGAAGAAAACACCATCCAAGAATATGATAGTACTCGTGGATATCGTAAGAATTTTGCAGTGATGTTTGATGGACGTATCTGGACTGCAAAAGAAGATATCGCAGCTCCAGCTGGTACGTTCCAAGAACCTCGTTGGACAGCATTACGTACAGATGCTAAATGGAAGTATGTAACTTCTGGTGCTAATAACGCACTTAAATCAGGTGATTACATCTCTGTATCAACCGAAACAAGTGATGTTGGATTTGTTTTACCTAATACTCCACAAGATGGAGACACAATAGTAATTAAAGATGTTGGCGGTAAGGTTGGGTATAACTCATTAAAGGTTAAAATTTCTAACCAATCTATTATCCGTTTTAATGTTCCTGTTTCTGAAGTAATTATTACTAAAGCACGTGCTGAAAGTATTTTCATTTTTAGTAATAGACAATGGCAATTCTATTCTTATGAAGAAGATGAACATGCTATCAGAGTAACTTCTGCAGCTGAACATAGAGCAACGGCTGGTGAACATATTTTCCGTACCCATGCAAACCCAGGTCTAGTTAAAGTAATGCTGCCTAAGTTTGCTAATAATGGTGACATCATTTATTTTACCGATCTTGACGGGTTAGGTCCTATTCATCATTTACAGCTTCGTACTTTTGACGATAGTACAAGTATTGGTAAAGCTGGGGTTCATCAGGCTGAATACCGTACTTCAGGTGATGGTTTAGTTGTATTTGATGCTGCTGAAAAAGTTTGGCGCACTTGGGATGGCGATCTCAGGACTCGTCTTCGTATTATTCGTGATGATGTTAAACTTATGCCTAACGAAAGTGTTATGGTGATTGGTACGAATAATGCTATAGAAAAAACTATTAATGTTGAATTGCCATTATCAGTTGCATTAGGCGATAAAGTTCGTATCGCTATGAACTATATGCGTAAAGGACAGAAAGTTGTTATTAAAGCGGCTGAAGGCGATACAATAGCTACTTCTAAATCTTTACTTCAATTCCCTAAACGTTCAGAATATCCACCTGAAGTAGAATGGGTACAAGTTACTTCATTAACCTTTGACGGTACTCAGGATTATGTTCCTATTATTGAACTTTCTTATATTGAAGATGGAACTAAACATTATTGGGTAGTTTCAACAAACGATCCAACAGTTGAACGTGTCGATTCTAAAACAGATGAAACTCGTAAACGTTTAGGCGTAATTGCACTGGCGAGCCAGACTCAAGCTAACGTTGATAAAGAAAACAATCCAGAAAAAGAACTTGCTATTACTCCTGAAACTTTAGCAAATCGTACTTCTACCGAATCAAGACGTGGTATTTCTCGTTTAGCTACTACGGCAGAAGTTGTACAGGATTCTAACTTTGCTTTCTTAGATGATGTCATTGTTACTCCTAAAAAACTGAATCAACGTGTTGCTACTGAAACTTCTCGTGGTTTAGCCGAAATAGCTACTCAAACTGAAACCAACCAAGGAACAGATGATACAACTATTATAACGCCAAAGAAATTAGAAGCACGTCGTGCAACTGAAAATATGGCTGGTATCGCTAAACTTGTTTCTACAGTTGGAACTACTGCAGGCGTAGATCGTGCAACTAAAGGAACCAATGTCTATGATTATGACAATAACACTGATATTGTAACTCCTAAGTCCCTGGCACAACAGAAGGCGACTTATACAGAACAGGGTTCATTGTTCATTGCCACAGCTAATGAAGTTATTTCAGGCGTCTCTCAGGAAGGATTCCAGACCGCAGTTACTCCTGTTGAATTGCATAAGAAAACTGCTACTGAAACTCGTATTGGATTTAGTGAACTTGCTACGCAAGCAGAAACTGATGCTGGTACTGATGATTTTAGAATTGTTACACCTAAGAAATTGAATGACCGTAAGGCTCGTGAAGATTTGACTGGTTTGGCAAGAATTGCAACACAAGTTGAATTTGATGCAGGTACTTTAGATAATGTTATTTCAACTCCGTTGAAAGTTAAAACACATTTCAATGATACTGCCCGTACTTCTGTTGTAACCGATAGTGGTTTAGTAGAACAAGGAACTCTCTGGAACCATTATACCCTTGATATCCAAGAAGCATCTGAAACCCAACGTGGCACAGCTCGCTTGGCAACTCAAGGTGAAGTTGATACTGGAACAGATGATAAGACTGTTGTTACACCTTTGAAACTGCATAAGAAGAAAGCAACCGAATCATCTGAAGGTATCGTTAAAATCGCTACTCAAGTTGAAACAGTAGCCGGAACTTCTTCTATTACGGCTGTTTCTCCTAAAAATCTGAAACATGTTATCCAAGTAGAAAAAACTTGGGAAGCATCACCAGTTCTCCGAGGACTAGTTAAGATTTCAGAAAATGCTATCACTTGGGAAGGTAATAATGTAGATGGTTCAACTAAACCTCTTGAAAATTATGAGAAGTCTGGCTATGCTATTTCTCCTTATGAATTAAACAAGACTTTAGCGAATTATCTCCCTAAAATGGGTCAAGCCGAAGATTCACGTAATTTAGATGGACTAGATTCATCTCAGTTCATTCGTCGTGATATCGACCAAACAGTTAATGGTAAATTGACTCTTACTAAAGAAACGACAGTTTCGGCTCCTATTGTTTCAACTTCTACTGCGAAGTTTGATTCTGTAACGAGCGTTAAGAGTGTTACTATTGGCGATGGAACGGGTGATGCTGTTTTCAATATGCTAGGTAAAGACAATCCTTGGAATGTTTCTTCACTGACTTCTAAAGAAACCTTGGAATTCAAATCAGGAGATACTAACGCATTAGTTATCAATAAAAATGGTAACTTGACTTCAGCAGGACAAATTGCTGCTCCTTCAGTAGATGTTTCAAAATCTTATAAACTGAACGGTGTAAACGTTTTAACTTCAGAAACAATTGGTGTTACCCCAGTCGTTTCAGTTGGTTCAACTACTCAAAAATTAGTTATCAAAACAGTTGATGCTGGAAAAATCGATATCTATGATAAAGATTCTCCATCAACTCCTTATACTGTTCTGACTACTAAAAACGCAGTTGATATTGTTGGCAATAACTTTGTTAAGAAAATTGGTGATAACATGAGCGGTCGCTTAACAGTGAACGCTGCAATGTCAATCATCATGGACCAAGACAAAGCCATGCTTCCATTATCTTCTGAAACAATCGGTACTTGGTCTACTGAAATCACTAAGAAAACCCATTACGATAAATTACCTGGTTATGTTGTCCCAGTATTTGTTGAGGGTGAAGAAGGCGGTTCTACCGGTATAGTTGAGCGTTATGAAGAAGTTAAATCAATAGGAACTATGTCTCAGTTCGGTGTATCTGCAGCATATACTTATCGCATTTGGACACCTCGTCCACAGGTTCCACAGGATAACCATAATGCGGTTTCAATGTATATGCAGATGTGGGATTCTGCACGTAATACATGGGGTCAATGGTCTCGTATGTTTACTTCAGAGGCGCCTCCTACTGCGGCCGATATCGGTGCTGTTTCTACAGCTGGTTCTGCATTCGATAACTTGAAAATCCATAAATGGCTTCAGATCGGTAATGTACGTATTGAACCAGATGAAACAACTCGTACTGTTAAATTCACTTGGGTTGATAATCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
871de756f6ef558351151a0d1551cb46225fd72c3994fe2b59c1480412bbf5a7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5708
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
An OmpW-dependent T4-like phage infects Serratia sp. ATCC 39006 Mahler,M., Malone,L.M., van den Berg,D.F., Smith,L.M., Brouns,S.J.J. and Fineran,P.C. — — GenBank