Protein

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Genbank accession
ATN92782.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MAIVLRRANGDIIWFDAITQYNTTYSASVTKHPVATGGYVADHVTTDNVVIQISGVFSDADFNISRQLVEVRSPDGTALTPNKQYTNNTQTVYPVTINDQGSINKFLPEVIAQFTKDSIPTAFVTPQDKAKTALVVKADLIRMWKEREEFQVLDIINNNVAEQFSPCVFTGISFQEDESTGEGIFPVMTIEQVVFTNLQQISVKIKTSNKGRKAGTVTTKPVEVPPDNAPKDFTKTSASELKSGTTTTTTTTTTGG
Physico‐chemical
properties
protein length:256 AA
molecular weight: 27965,09350 Da
isoelectric point:5,28832
aromaticity:0,07812
hydropathy:-0,25625

Domains

Domains [InterPro]
IPR048494
ATT
15–203
IPR048494
DC_1100
STR
26–255
DC_1100
ATN92782.1
1 256
Architecture
ATT
STR
ATT 15-203 | STR 204-255 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PPSC2
[NCBI] 		2041350 Uroviricota > Caudoviricetes > Vandenendeviridae > Shenlongvirus > Shenlongvirus PPSC2
Host Pseudomonas fluorescens
[NCBI] 		294 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATN92782.1 [NCBI]
Genbank nucleotide accession
MF893340.1 [NCBI]
CDS location
range 14105 -> 14875
strand +
CDS
ATGGCTATCGTACTCCGTAGGGCTAACGGTGACATTATCTGGTTTGACGCAATCACGCAGTACAATACAACGTACTCCGCATCTGTAACTAAACATCCCGTCGCTACTGGCGGGTATGTTGCAGACCATGTGACAACAGATAACGTTGTAATTCAGATTAGTGGTGTATTCTCCGACGCAGACTTTAACATCTCAAGGCAACTTGTTGAGGTTAGAAGTCCTGATGGTACGGCGTTGACACCAAACAAACAGTACACAAACAACACTCAAACAGTCTATCCTGTAACAATCAATGACCAAGGAAGCATCAACAAGTTCTTGCCAGAGGTTATTGCACAGTTCACAAAAGATAGTATCCCAACTGCCTTTGTAACTCCGCAGGATAAGGCTAAGACTGCACTCGTTGTAAAAGCTGACTTGATCAGAATGTGGAAAGAACGAGAGGAGTTCCAAGTTCTGGATATTATCAACAACAACGTTGCCGAGCAGTTCAGCCCATGCGTCTTTACTGGCATCAGCTTCCAAGAAGATGAAAGCACAGGAGAAGGAATCTTTCCAGTCATGACAATTGAGCAAGTAGTTTTTACAAACTTGCAGCAAATCAGTGTCAAGATTAAAACATCTAATAAGGGTAGAAAGGCTGGGACAGTTACAACTAAACCAGTTGAAGTTCCACCTGACAACGCTCCAAAGGACTTTACAAAAACCTCCGCAAGTGAGCTTAAGTCTGGGACTACAACCACAACTACCACAACTACGACAGGGGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9acfda4ebaae82dc32b1dc85ac4fd1530d1b0362bf8abdd03bae3b532b7075df
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7091
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization and phylogenetic analysis of the novel Pseudomonas phage PPSC2 Wu,X., Wu,Y., Tang,Y. and Gan,B. 2018 29541847 GenBank