Protein

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Genbank accession
YP_009816858.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARVGGSYESVVRGVSEQAPQDRRSGQMWEQVNMISDPVRGLSRRKGSQYQNAQRILGTDVGELQVMDDTPTMVVQDFTVNGVDYDLIYSKTRRTTLGPMYCYDKTNKTFLPITGTGVIWDALVANGVSGLTNIGRFLFIAAHGYYPTYTTTQVIEEDSAAKRITLWVRNGDYNRNYRFRYTDTSGVTRTASYTTPSATYSGVLDTSQVPVPTIDVSDNPDADTINRRLAKFNSEMSAYNKQVADITNTYNMAVTAWVRSSSAAIQPSVVATELAAVIQAETGGTLHVEGTYIHIDYDANIRAGTAVDGGDNTYLRAVVSSTDDPAQLTPQAWYGKVIRVKSTTSQSTDPYYVRAEPQNAGDASVYQYGSVTWRECPGVETTPTSAFAFATVSGGVLYVGSSPAELNTLTGRTDTPTFYKSSVGDLVTSPLPAFLNNRQIDYLGNFQDRLLVGCGSTIFASRPGSYLNWFRASVLVVKDNDPVEMYALGSEDDTIVWDASFDRNHVMFGRKYQYMLPGRAMLSPSNPTIQIMSRIEDAVRAQPQSSGNFVFYAKDTQTKGSLHQIQIGATADSAESYECSQQLDKYLEGKPVQILCDQSPFNILVRTRSKFNGFYVYTYLDSMQGGERLFDSWSKWEWDEKLGSCVGVQKFEGELLVYTVRVNSTGGWLVCDKFTFDTDTTTVPMLDSWRSYTAQEEFPLWWDSSLEDNAAVAYRSTHEYFLLGSDYKSRDANIPEWREDVSHLVVGTKFPAYFAPTSPYIRDRRDRAVITGRLTVGAMTLSVSDTGGLEGTVQLPDRSVQMASFNGRLLSRQSNRAGVSPLVDTTVRVPIHREIREFKLYVSALTWLPLTVTGIEWIGQWFSNVKRV
Physico‐chemical
properties
protein length:868 AA
molecular weight: 96626,86150 Da
isoelectric point:5,36182
aromaticity:0,10945
hydropathy:-0,33399

Domains

Domains [InterPro]
IPR058003
TTP
1–52
IPR058003 IPR058003
DC_0058
STR
1–868
DC_0058
Coil
Unmapped
222–242
Coil
YP_009816858.1
1 868
Architecture
STR
STR 1-868
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009816858.1
1 868
Domain Start End Length (AA) Confidence
N-terminal 1 156 156 0,9501
Central domain 157 355 200 0,4638
C-terminal 356 868 512 0,1213
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-156
Central
157-355
C-terminal
356-868

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Arno160
[NCBI] 		2488835 Uroviricota > Caudoviricetes > Autographivirales > Melnykvirinae > Wanjuvirus
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009816858.1 [NCBI]
Genbank nucleotide accession
NC_048111 [NCBI]
CDS location
range 25211 -> 27817
strand +
CDS
ATGGCCCGAGTTGGTGGCAGTTATGAATCAGTAGTACGGGGCGTATCCGAGCAAGCTCCGCAGGACAGGCGCTCGGGCCAAATGTGGGAACAGGTCAACATGATATCTGACCCTGTGCGTGGCCTATCTCGCCGCAAGGGTTCGCAGTACCAGAATGCCCAGCGCATACTCGGAACTGATGTAGGTGAGCTGCAAGTGATGGACGACACACCTACCATGGTTGTTCAGGACTTCACAGTAAACGGTGTGGATTACGATTTAATATACTCCAAAACCAGAAGGACGACACTTGGGCCAATGTACTGCTATGACAAGACCAATAAGACCTTCCTGCCAATAACAGGCACAGGTGTTATCTGGGATGCTCTGGTGGCTAACGGTGTATCTGGACTGACTAACATCGGAAGATTCCTGTTTATTGCAGCTCACGGGTACTACCCAACCTACACAACCACACAGGTTATAGAGGAGGACTCTGCTGCTAAGCGGATAACCCTGTGGGTGCGTAATGGGGACTACAACAGGAATTACAGATTCAGGTACACCGACACATCTGGTGTAACACGCACAGCGTCATACACAACCCCATCTGCGACGTACTCAGGTGTACTGGATACTTCACAGGTGCCAGTACCTACGATCGATGTGTCGGACAACCCTGACGCAGATACCATAAACCGAAGACTTGCTAAGTTTAACTCTGAAATGAGTGCATACAACAAGCAGGTAGCTGACATAACGAACACATATAACATGGCCGTTACGGCATGGGTGCGCTCATCCTCAGCGGCTATACAACCTTCAGTAGTCGCCACCGAGTTAGCAGCTGTAATACAGGCAGAAACAGGTGGAACACTTCATGTTGAGGGTACTTATATCCACATCGACTACGATGCGAATATACGTGCAGGTACAGCTGTTGATGGTGGGGATAACACCTACCTGCGTGCTGTTGTATCCTCCACTGATGACCCAGCGCAGTTAACACCACAGGCGTGGTATGGAAAGGTAATTCGGGTTAAGTCAACGACATCACAGAGCACCGACCCGTACTACGTCAGGGCAGAGCCGCAGAACGCAGGAGATGCTTCTGTGTATCAATATGGCTCTGTAACGTGGCGGGAGTGTCCGGGTGTGGAGACTACACCTACATCCGCGTTCGCATTCGCCACAGTGTCAGGGGGTGTCCTCTATGTGGGTTCATCACCTGCGGAGCTGAATACACTGACCGGACGTACGGATACCCCTACCTTCTATAAATCCTCTGTTGGGGATTTGGTTACGAGTCCACTCCCTGCGTTCTTGAATAACCGTCAGATAGACTACCTTGGAAACTTCCAAGACCGTCTTTTAGTAGGATGCGGCTCTACAATATTCGCTAGTCGTCCGGGTAGTTACCTGAACTGGTTCCGGGCCTCCGTATTGGTTGTAAAGGATAACGACCCTGTTGAGATGTATGCTCTGGGTTCGGAAGACGATACGATTGTATGGGATGCCAGCTTTGACAGGAACCATGTGATGTTCGGCAGGAAGTACCAGTATATGCTGCCGGGCAGGGCTATGTTATCCCCATCTAACCCCACAATCCAGATAATGAGTCGTATCGAAGATGCTGTAAGGGCGCAGCCTCAGTCGTCAGGTAACTTCGTTTTCTATGCGAAGGATACCCAGACTAAGGGTTCCTTGCACCAGATACAGATAGGTGCTACGGCGGATTCTGCGGAATCCTACGAGTGTTCACAGCAGCTGGACAAGTACCTAGAGGGTAAACCTGTACAGATACTGTGTGACCAATCACCATTCAATATCCTTGTTCGCACTCGCAGCAAGTTTAATGGGTTCTATGTCTACACCTACCTTGATTCGATGCAGGGTGGTGAGAGGTTGTTTGACAGTTGGTCGAAGTGGGAATGGGATGAGAAGCTGGGAAGCTGTGTGGGTGTCCAGAAGTTTGAAGGTGAGCTTCTTGTTTATACTGTCCGGGTTAACTCTACAGGTGGTTGGTTGGTATGCGATAAGTTCACATTTGATACGGATACTACAACCGTACCTATGCTGGACTCATGGCGCTCCTACACTGCACAAGAGGAGTTCCCTCTTTGGTGGGATTCCTCCTTGGAGGATAACGCAGCAGTGGCGTACCGAAGCACGCATGAATACTTCCTACTGGGTTCGGACTATAAGTCTCGGGATGCAAACATACCGGAGTGGCGGGAGGATGTTTCCCATCTTGTTGTAGGGACAAAATTCCCAGCCTACTTCGCACCAACCAGTCCGTATATTCGGGATAGGAGAGACCGGGCAGTTATTACTGGTCGTCTTACTGTAGGCGCAATGACCCTATCCGTCTCCGACACGGGGGGGTTGGAGGGTACTGTGCAATTGCCGGACAGGTCTGTACAAATGGCTTCCTTTAATGGGCGGCTATTAAGCAGACAGTCAAACAGGGCAGGTGTGTCTCCATTAGTGGACACTACGGTTAGAGTTCCCATCCATAGAGAGATACGGGAGTTTAAACTCTACGTATCTGCCCTTACGTGGTTGCCGCTCACTGTAACAGGTATAGAGTGGATTGGACAATGGTTCAGCAACGTTAAGAGGGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1e48a9b595ed2b9e41f36896717fd20b7c8fac47d6e90f8a091c9e48b91918c6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3140
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50