Protein

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Genbank accession
YP_010078810.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 0,91
TF
Evidence RBPdetect
Probability 0,74
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MTESLNSRVAKFDEIVTNVDTWVKGGSADTVDFGGGPVDSPAKLIEGQRTDIAAAAAALISQKDEQINQQANGVLAQANAAASNANGSAGAASASAASAAASAANSAASAADSAASSAQKFVTSAGAANQKPNTSYTYINPLSRVCTITGGGDGSNFQMIGYGHNRQKFLGAATTGVWNYLPVNGIANLNFYRIAGDGTRTKLTYTSGTPTGNQWSGTVGASSVTWTLGTALDTLSKLFVEDPFATIPTTGTQPDYSWIGGGYDNVVDRGVMQHVTGAHNRVLDGDHTTMLGGSYHTNDGGSYNAFCGGTDNWNGSGATLGSGHFGGLRNYCNGATSGTTFAQSCKVNSAYSWTHGYGNTANGTAVSIGGRNNTASGSDSAVFGNGNTSTANYSFAIGNGNTVGHHYARSLGGYKGSTLYQGELLVWAYRDTSVGTNPFVSRRQVPLSVVTSTTASALLATLDGITNLTMPVSTAWKCTLEVFARSTALRCAAFELKFRASTDSSGTLILGTPTVVWSDVDANFGTAANAASVSVVANGNAINCVVQPRVDSPVGAKWGAVLHINEVN
Physico‐chemical
properties
protein length:568 AA
molecular weight: 58190,12530 Da
isoelectric point:6,35479
aromaticity:0,08275
hydropathy:-0,14401

Domains

Domains [InterPro]
DC_0261
STR
1–305
DC_0261 IPR011049 DC_0296
IPR011049
STR
321–410
IPR011049
YP_010078810.1
1 568
Architecture
STR
STR
RBD
STR 1-305 | STR 321-423 | RBD 433-568
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010078810.1
1 568
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,8369
Central domain 141 403 264 0,8228
C-terminal 404 568 164 0,9812
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-403
C-terminal
404-568

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage GP4
[NCBI] 		2282904 Uroviricota > Caudoviricetes > Gervaisevirus >
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010078810.1 [NCBI]
Genbank nucleotide accession
NC_054964 [NCBI]
CDS location
range 56244 -> 57950
strand -
CDS
GTGACCGAATCACTGAACAGCCGCGTCGCCAAGTTCGACGAGATCGTCACCAACGTTGACACGTGGGTGAAGGGCGGGAGCGCCGACACCGTTGATTTCGGTGGCGGCCCGGTCGATTCGCCCGCAAAGCTCATCGAGGGCCAGCGAACAGACATCGCTGCTGCTGCTGCGGCGCTGATCTCGCAGAAGGATGAGCAGATCAACCAGCAGGCGAACGGCGTGCTGGCGCAGGCGAACGCGGCGGCCAGCAATGCAAACGGCAGCGCTGGCGCGGCGTCGGCGAGCGCAGCGAGTGCGGCAGCGTCGGCGGCCAACAGCGCTGCGAGCGCGGCGGATTCTGCCGCATCGTCGGCTCAGAAGTTCGTGACGTCGGCCGGCGCGGCGAACCAGAAGCCGAACACGTCGTACACCTACATCAACCCGCTGTCGCGCGTGTGCACCATCACGGGAGGCGGGGACGGCTCGAACTTCCAGATGATCGGGTACGGCCACAACCGCCAGAAGTTTCTGGGCGCGGCCACCACTGGCGTCTGGAACTACCTGCCGGTCAACGGCATCGCCAACCTGAATTTCTACAGGATCGCGGGAGATGGCACTCGCACAAAGCTGACGTACACATCCGGCACTCCGACCGGTAATCAGTGGTCCGGCACCGTGGGCGCCAGCAGCGTCACCTGGACGCTCGGCACGGCCCTGGACACGTTGAGCAAACTGTTCGTTGAAGACCCATTTGCCACGATCCCGACGACGGGCACGCAGCCTGACTACTCCTGGATCGGCGGCGGCTATGACAATGTGGTCGATAGGGGCGTGATGCAGCATGTCACGGGCGCGCACAATCGCGTGCTCGACGGCGACCACACCACGATGCTGGGCGGCAGCTACCACACCAACGACGGGGGCAGCTACAACGCATTCTGCGGCGGTACCGACAACTGGAACGGATCGGGCGCCACGCTGGGCAGCGGTCACTTCGGCGGGCTGCGCAACTATTGCAACGGCGCCACCTCTGGCACGACGTTCGCGCAGTCCTGCAAGGTGAACTCTGCGTACAGCTGGACGCACGGCTACGGGAATACTGCCAATGGCACCGCCGTCTCCATCGGCGGGCGAAACAACACCGCATCCGGGTCGGACTCGGCCGTCTTCGGCAACGGCAACACCAGCACCGCGAACTACTCGTTCGCCATCGGCAACGGCAACACGGTCGGCCATCACTACGCCCGCAGTCTGGGCGGGTACAAGGGCAGCACGCTGTATCAGGGTGAGCTGCTGGTCTGGGCGTACCGCGACACGTCGGTCGGCACGAACCCGTTCGTGAGCCGCCGGCAGGTCCCGCTGTCCGTCGTCACCAGCACCACCGCATCGGCACTGCTAGCCACGCTGGACGGCATCACCAACCTCACGATGCCCGTCAGCACCGCCTGGAAGTGCACGCTGGAGGTGTTCGCGCGCAGCACGGCCCTGCGGTGCGCCGCGTTCGAGCTGAAGTTTCGGGCCAGCACCGATTCATCAGGCACTCTGATCCTGGGCACGCCGACCGTGGTCTGGTCCGACGTGGACGCGAATTTCGGCACGGCTGCCAACGCTGCCTCGGTCTCGGTCGTCGCCAACGGCAATGCCATCAACTGCGTGGTGCAGCCACGGGTCGATTCTCCAGTCGGCGCAAAATGGGGCGCCGTGCTGCACATCAATGAGGTGAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
08f6e922e56697a14ce4d0a5186619b0fbbd32801591938c6407cf1b614aa093
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7634
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete sequence of phage GP4 Wang,R., Tong,Y. and Liu,H. 2019-06-18 — GenBank