Protein

View in Explore
Genbank accession
QIA28514.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADEIKKVKIQLRRGLENELTDLSIGEAALSSDSKKVFIGTGNGNKDQLAKQGQVDTIQTDVNTAKNNISTLQTDNTKNKQDISQLKTDTTGVRNDLNDVVDTVGTLGTDVETAKDDISTLQGTKAEVDTARNGAANLDERLKGMEKADNRQSWKVTAATQTRFTLTNGSYTVGSNSFAVYLEGILQPTDAYVQVDSKNFDMVDPVPKDLTVTAVWKEGKAPIQFGHNTTHYEGGQDPIDLTKLPNYSTLIANKFTSIENRLGWVSVKDYGAKGDGVTDDTAAIQAAVDVVMKSGGGTVFFPPGNYLINGTIYTQRDSYSANDILSPLEFRGVTPVFADLFNTTRNVSRLIKKNAGAMITTNYTETGVVRVGGVWRNFTVRNFAFAGLGTFDTKYTSHFASTYDTDAIVMRNTSINLEDCYFSTLKRAVYQPEFVNGADNYCDQSMYKRLSFRNMGEGWLYLMRPDATTFVNLNGYDMAKTAAYGVYVKKGESFGIRDILCAGKGMHLCQNFKMVDLYGVKGVTVDKLYAERVEGLLVNVDGESKNITVDGIDVRQYGKTMIKARNTSGLKIDNLYQHIEEKKVLSASDTGDFSTYDTLGSLPLDIDVDSSCSNVQVGESTVFRGGVHVGGSGNLPESGSDTFRYLPNMNPGFIYKLNVRRFGARGNNITDDTAAIQKAFDLAKLHGAEVYFPRGTYIVTSLSIDYSSDTVDTTTYGFRAFKISGGAKRQTIIKQTATTTNSIIKVIGQSYNRSHSGKVTGLIIEGLEIVGNVDGGSGIYLRSFNDLTLRDLHIRGCGGDGIKLDRQTFINQPDADGGKDEYAYGLKIENSKIFLNKGWGINSVAQYAMGSAVFDNLDIHGNTLGGVNINPTNVTFIGGNIIGNGGNGLKVIQNPGYPASVTFSMNMYGTRFEGNSGYEVKLDGSWAPLLSGVTILATAGAHCIGIGLVTTTGNEIRQPNIVGGYYAGDKVTVGQKFLDIGTNCFALVVNNPRVDLVEFADGTSGNVMNIIRDNGNESSIITYGRTERTEKIYLRALYTDKTMQTKVYGDTQSRLTVRADGYLSWGSGAAAADTNLYRSAASKLKTDGEFHANVISPQSTDAKIYSGTGDPNGVVTAASGSIFLRTDGGAGTSFYIKESDTGSSNWVAK
Physico‐chemical
properties
protein length:1149 AA
molecular weight: 124381,61670 Da
isoelectric point:5,90002
aromaticity:0,08877
hydropathy:-0,31784

Domains

Domains [InterPro]
DC_2217
STR
1–200
DC_2217 DC_0579 IPR012334 DC_2009
G3DSA:1.20.5.340
STR
45–143
G3DSA:1.20.5.340 IPR012334 IPR011050
Coil
Unmapped
128–148
Coil IPR051801 IPR006626 IPR024535 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR011050
STR
262–574
IPR011050
IPR024535
ENZ
264–313
IPR024535
QIA28514.1
1 1149
Architecture
STR
STR
STR
RBD
STR 1-200 | STR 207-654 | STR 656-1023 | RBD 1109-1149
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIA28514.1
1 1149
Domain Start End Length (AA) Confidence
N-terminal 1 279 279 0,9929
Central domain 280 1004 726 0,9483
C-terminal 1005 1149 144 0,8819
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-279
Central
280-1004
C-terminal
1005-1149

Taxonomy

  Name Taxonomy ID Lineage
Phage Phage f2b1
[NCBI] 		2708592 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIA28514.1 [NCBI]
Genbank nucleotide accession
MN940411.1 [NCBI]
CDS location
range 13179 -> 16628
strand +
CDS
ATGGCAGATGAAATCAAAAAAGTTAAGATACAGCTGAGACGTGGACTAGAAAACGAACTGACTGATTTATCTATTGGTGAGGCTGCTCTGTCTTCCGATTCTAAGAAAGTATTTATCGGTACAGGGAACGGAAATAAAGATCAGTTAGCTAAACAAGGTCAAGTAGATACTATCCAAACAGATGTTAATACTGCTAAGAATAACATCTCTACTTTACAGACAGACAATACTAAAAACAAACAAGATATTTCTCAATTAAAAACGGATACTACAGGTGTTCGTAACGATCTGAACGATGTAGTAGATACAGTAGGTACACTGGGCACAGACGTGGAAACTGCTAAGGATGATATCTCTACACTACAAGGAACTAAGGCAGAAGTAGATACTGCTAGAAACGGAGCAGCTAACTTAGACGAGCGGTTAAAAGGAATGGAGAAAGCGGATAACAGACAGAGCTGGAAAGTAACTGCAGCTACGCAAACTCGTTTCACTTTAACAAACGGCTCTTATACAGTAGGCTCTAACTCTTTTGCAGTTTACCTTGAAGGTATCCTACAGCCTACAGATGCTTATGTTCAAGTAGATTCTAAGAACTTTGATATGGTAGACCCAGTTCCAAAGGACTTAACCGTTACTGCTGTTTGGAAAGAAGGGAAAGCCCCTATCCAGTTTGGTCATAACACTACTCACTACGAGGGCGGTCAAGACCCTATCGATTTAACTAAGCTCCCTAACTATAGCACACTAATTGCAAACAAGTTTACTTCTATTGAGAACAGACTTGGATGGGTTAGTGTTAAGGACTACGGAGCTAAAGGTGATGGAGTAACAGATGATACTGCCGCTATTCAAGCTGCTGTAGACGTAGTCATGAAGAGCGGTGGAGGTACTGTGTTCTTCCCTCCGGGTAACTACTTAATTAACGGAACAATCTACACTCAACGTGACTCGTATTCTGCTAATGACATTCTAAGTCCGTTAGAGTTCCGTGGAGTCACACCTGTGTTTGCTGATCTGTTCAACACGACTCGTAACGTATCCCGCTTAATCAAGAAAAATGCAGGGGCTATGATTACAACAAACTACACAGAAACAGGAGTAGTTCGAGTAGGTGGAGTATGGAGAAACTTTACAGTCCGTAACTTCGCGTTTGCAGGACTAGGAACATTCGATACGAAGTACACAAGTCACTTTGCTTCTACGTACGATACAGACGCAATCGTAATGCGTAACACAAGTATCAATCTAGAAGACTGCTACTTTAGCACACTAAAACGAGCTGTGTATCAACCTGAGTTTGTAAATGGTGCAGACAACTACTGTGACCAGAGTATGTACAAGCGTCTATCTTTCCGTAACATGGGAGAAGGCTGGTTATACTTAATGCGTCCAGATGCTACAACATTTGTAAACTTAAACGGGTACGATATGGCTAAGACAGCAGCTTATGGTGTTTACGTGAAGAAAGGTGAGTCTTTCGGTATACGTGACATCTTATGTGCAGGTAAAGGAATGCACTTGTGCCAGAACTTTAAAATGGTTGATCTTTACGGTGTTAAAGGGGTTACTGTTGACAAGCTATACGCAGAACGTGTTGAAGGACTTCTAGTTAACGTTGACGGTGAGTCTAAGAACATCACTGTAGACGGTATCGATGTTCGTCAGTATGGTAAAACGATGATTAAAGCTCGTAACACTTCTGGGTTAAAAATCGATAACCTGTACCAACACATCGAAGAAAAGAAAGTTCTTTCTGCATCTGATACAGGAGACTTCTCTACTTACGATACACTAGGTTCTCTACCTCTAGATATCGATGTAGACTCAAGTTGCTCAAATGTTCAGGTAGGTGAAAGTACAGTGTTCCGTGGTGGTGTTCACGTAGGAGGCAGTGGTAACCTACCAGAATCCGGTTCTGATACATTCCGTTATTTACCTAATATGAACCCTGGGTTTATCTACAAACTGAATGTAAGACGTTTTGGAGCTAGAGGAAACAACATCACAGATGACACAGCAGCTATCCAGAAGGCATTTGACCTAGCTAAGCTTCACGGAGCAGAGGTGTATTTCCCTCGTGGAACATACATTGTCACTTCCTTATCTATCGATTACTCATCTGATACAGTAGACACAACTACTTACGGGTTCCGTGCATTCAAAATTTCAGGTGGAGCAAAGCGTCAGACAATCATTAAACAGACAGCTACAACAACTAACTCTATCATTAAGGTTATCGGTCAGTCTTATAACCGTTCACATAGTGGTAAGGTTACAGGGTTAATCATCGAGGGTCTAGAGATCGTTGGTAACGTTGACGGGGGCTCTGGTATCTACTTACGCTCATTCAATGATTTAACACTTCGTGACTTGCACATTCGTGGCTGTGGTGGAGATGGTATCAAGCTGGATAGACAAACGTTTATCAACCAACCTGACGCTGACGGAGGGAAAGATGAATATGCTTACGGTCTGAAGATTGAAAATTCTAAAATCTTCTTAAACAAAGGCTGGGGTATTAACTCTGTAGCTCAGTACGCAATGGGTTCTGCTGTATTCGATAACCTAGACATCCACGGTAACACTCTTGGCGGAGTTAACATTAACCCTACAAACGTTACATTTATCGGGGGTAATATCATCGGTAATGGTGGTAACGGGTTAAAAGTAATTCAAAACCCGGGATACCCTGCCTCAGTAACGTTCAGTATGAACATGTATGGTACACGCTTCGAAGGTAACTCAGGCTACGAGGTTAAACTTGACGGTTCTTGGGCTCCTTTATTAAGTGGTGTTACTATCCTAGCTACAGCTGGAGCACATTGTATCGGTATCGGTCTTGTCACTACAACAGGTAACGAGATTCGTCAACCTAACATCGTAGGAGGATATTACGCAGGGGACAAAGTTACAGTAGGTCAGAAGTTCCTAGATATTGGAACAAACTGTTTTGCTTTAGTAGTGAACAACCCTCGTGTTGATCTAGTAGAATTTGCCGATGGAACTAGCGGAAACGTAATGAACATTATCCGAGACAATGGTAATGAGTCTAGTATCATCACGTATGGTCGAACAGAGCGTACAGAGAAAATCTATCTACGAGCTTTATACACAGATAAAACAATGCAAACGAAGGTTTACGGAGACACACAAAGCCGTTTAACTGTTCGTGCAGATGGTTACTTATCTTGGGGTAGTGGAGCAGCAGCAGCGGATACAAACCTTTATCGTTCAGCAGCAAGTAAGCTTAAGACAGACGGTGAGTTCCACGCTAACGTTATTTCTCCACAGAGTACAGATGCTAAGATTTACTCTGGTACTGGAGACCCTAATGGAGTAGTGACAGCCGCTAGTGGTTCTATCTTCCTAAGAACAGATGGCGGGGCAGGTACCTCATTCTATATTAAAGAAAGCGATACTGGTTCTAGTAACTGGGTAGCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d8a41adf41ae583851bbe7ac0670cc6eb32df4b9f7b8a88fdc4035ea0285aee5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2739
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50