Protein

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Genbank accession
QPL22358.1 [GenBank]
Protein name
neck passage structure
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSLDNFRNRTIIWDTVNKDFPQPIQIMQGDVNARMLLIKIVDNGVEIDLTGHSLKLAYQYTNSSNSGFVMIPPKDLAKGEFILVIPTEMTTTGVIEANLILLNESLEQVIVSKSLTFISDNSTVTDLAQEVNNKIDDFTKLLLENMPQVMRSELNDLHAQTEANLSDIEALQDSIAKISEAQANSLPLNVKWFGAKGDGVTDDTLSIQRAIDTGFSVFIPPGKYNVKELKGFSSGQIIQGISKAESWGGKNTQNITLLNGIGSADNYVIKNNVWTDGILPTAITVKNLSIEGGKKTNGILVGNSSTIEGVKIQNCINGLSKIKVSNVMNCQINNCTNGVMTAVDSKITNNFFYYNEVGINFDNSNDNSIVNNKIEWNRIGISLTKATFNLISNNIIDRNTTYGIYTFNTANTTILGNQFERNLTNHLYLQGSQFNISTNSFFRKNSEDNQSGIMAPDIAIFVKSVSNSMITNNFVNGKMFNKTGTDYSSNVNYSANTIDGINPDNISINIPETTVAHDQDTKIIIPLPSYFDGALNNPYNVEIVSQKMLITTQDGNFYSNGGIIKSIYMSKNGIELTIINHYKDDLKIAGTIKVRCVYPSLY
Physico‐chemical
properties
protein length:602 AA
molecular weight: 66388,22770 Da
isoelectric point:5,13378
aromaticity:0,07807
hydropathy:-0,19485

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
10–125
G3DSA:2.60.40.3350 IPR012334
IPR018913
ATT
13–147
IPR018913 IPR011050 IPR006626 DC_1144
IPR018913
ATT
25–147
IPR018913 IPR012334
IPR006626
Unmapped
280–303
IPR006626 IPR006626 IPR006626 IPR006626
IPR039448
ENZ
297–441
IPR039448
IPR011050
STR
379–509
IPR011050
IPR022441
Unmapped
380–422
IPR022441
QPL22358.1
1 602
Architecture
ATT
STR
RBD
ATT 10-147 | STR 185-521 | RBD 522-602
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPL22358.1
1 602
Domain Start End Length (AA) Confidence
N-terminal 1 205 205 0,9942
Central domain 206 507 303 0,9914
C-terminal 508 602 94 0,9856
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-205
Central
206-507
C-terminal
508-602

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage RH10
[NCBI] 		2777331 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus cremoris
[NCBI] 		1359 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPL22358.1 [NCBI]
Genbank nucleotide accession
MW041636 [NCBI]
CDS location
range 6863 -> 8671
strand +
CDS
ATGAGTTTAGATAATTTTAGAAATAGAACGATTATATGGGATACGGTTAATAAAGATTTCCCTCAACCAATACAAATAATGCAAGGCGACGTCAATGCAAGAATGTTATTGATTAAAATAGTTGATAATGGAGTTGAAATTGATTTAACTGGTCATTCATTAAAACTTGCATATCAATATACTAATAGTAGTAATTCTGGTTTTGTTATGATTCCTCCTAAGGACTTAGCTAAGGGAGAATTTATTTTGGTAATTCCTACCGAAATGACAACGACTGGAGTTATCGAGGCAAATTTAATTCTTCTCAACGAAAGTTTAGAGCAAGTTATCGTCAGCAAAAGTCTTACATTTATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAAATTGATGATTTCACTAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTAAATGACTTACATGCCCAAACTGAAGCAAATTTGTCTGATATAGAAGCTTTGCAAGATTCAATAGCAAAGATTTCCGAAGCACAAGCAAATAGTTTACCACTTAATGTCAAATGGTTTGGAGCTAAAGGAGACGGGGTAACTGATGACACTTTGTCAATTCAAAGAGCTATTGATACTGGTTTTTCAGTTTTTATACCTCCTGGTAAGTATAATGTAAAAGAATTGAAAGGTTTTTCATCAGGACAAATCATACAAGGAATTAGTAAAGCAGAGTCTTGGGGAGGGAAAAACACACAAAACATAACGCTCCTTAATGGAATAGGTTCTGCAGACAACTATGTGATAAAAAATAATGTTTGGACAGATGGTATTCTCCCCACCGCTATTACCGTAAAGAATTTATCCATAGAAGGTGGTAAAAAAACAAATGGAATACTTGTCGGAAACTCTAGTACAATTGAGGGAGTGAAAATCCAAAATTGTATTAATGGACTATCTAAGATAAAAGTTTCAAATGTTATGAATTGTCAAATTAACAATTGCACTAATGGAGTAATGACTGCCGTTGATTCAAAAATAACTAATAACTTTTTTTATTATAATGAAGTCGGTATAAATTTTGATAATTCAAATGATAACAGTATTGTGAATAATAAAATAGAGTGGAATAGAATAGGAATTTCCTTAACGAAAGCTACTTTCAATTTAATTAGTAATAATATTATTGACAGGAATACTACTTATGGAATATATACGTTTAATACGGCTAATACAACTATTTTAGGTAATCAGTTTGAAAGAAATTTAACAAATCATCTCTATCTTCAGGGTTCTCAATTTAATATTTCTACAAATTCTTTCTTTAGAAAAAATTCGGAAGATAACCAATCAGGAATAATGGCTCCTGATATAGCTATCTTTGTTAAGTCTGTGTCAAATTCTATGATAACAAATAATTTTGTTAATGGTAAAATGTTTAACAAGACGGGAACAGATTATAGCTCTAATGTTAACTACTCTGCCAATACGATAGATGGAATAAACCCTGATAACATCTCTATAAATATCCCAGAAACAACTGTCGCTCATGATCAAGATACAAAAATAATTATTCCTCTTCCAAGTTATTTTGACGGTGCATTAAACAATCCATATAATGTCGAAATTGTTTCCCAAAAAATGTTAATTACTACACAAGACGGAAATTTTTACTCTAACGGAGGAATCATAAAGAGCATTTATATGTCCAAAAATGGTATTGAGTTAACAATTATCAACCATTATAAAGATGATTTGAAAATAGCAGGGACAATAAAAGTAAGATGTGTATATCCAAGTTTATATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e9fe588f64d3ef64f7527f2b7d17e059f3ca1e7159c466d777a3be3cdb2a589b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8067
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of 10 Lactococcal Skunavirus Isolated from the Same Canadian Cheddar Cheese Plant Dore,L., Perrault-Jolicoeur,A., Labrie,S., Rousseau,G., Tremblay,D. and Moineau,S. 2015 — GenBank