Protein

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Genbank accession

UPW39410.1 [GenBank]

Protein name

receptor-recognition protein

RBP type

TSP

Evidence RBPdetect

Probability 0,82

Evidence RBPdetect2

Probability 0,95

Protein sequence

MATIKQIQFKRSKVAGVNPTAAQLAEGELAINLKDRTIFTKDDLGNIINLGFAKGGDINGNVTHVGNYTQTGTFNLIGSQNVASGGYIEFAYKGTGVGSWAGQHTAKAPIFMDISASTATSEYNPLIKQRYKDGTFSLGTLVNEGSMKMHYIDETGTSKYWTFRRDGGFTVDSGSLVVATGNISASGNINSATGIVSAPQVNTKTIVLDTKAFGQYDSQSLVQYVYPGTGEENGINYLRKFRAKSGGTIYHELVSSQTGKSEEISWWTGDTAINKRMGLRNDGSLVLRRSLAIGTITADENINNYGSTGAMGECYIVLGDPSTGFKSIASGKIDFVAQGTSTATLTNGVFLSTKRLTVGRSDDSGATWVMPGNNASVLTIQTTPDGNANGDGQTHLGYNSNGKFYHYFRGTGRMAVSMSEGLIVEPGILNIKTGNNELNLRADGTIYSTQRISIRSGMYFAGDDNTSALTFKAPTGVDGTKQILWEAGSRAGQNKSYVTVKAWGNSFNATGDKARETVFEVSDGQGYYFYSQRMAPSGSETTGPVVSQFNGQVNANGSINTAGSLKVDGLSTLNGAVTMSNGLSLTGGSSISGQVKIGGTNDALRIWNAEYGAIFRRSEAALHIIPTPKDAGESGGISNLRPLSISLNNGMVQMRHTVTLGDDGAGGNMVTVDNDTKLVVLTTNSRISPNFRMQLGQSTYIDAECTDIVKPAGAGSFVSQNNENVRAPFYMNINRTDTSTYVPILKQRYVQGDSCYSLGTLISTGDFRIHYHEGGDNDSTGPQKADLAWQFRRDGSFRSPNKIEINTVIIGTDGNITGGTGNFANLNTTINSLKTDIISSYPIGAPIPWPTDTPPVGYAIMEGQTFDKAAYPKLGAVYTSGTIPDMRGQTIKGKPSGRAVLSTEADGVKSHTHSASSNSVDLGTKTSSSFDYGTKTSSSFDYGTKSAASAGAHTHSLSGSTNSTGAHAHTDGLRMSSSGWSQYGTVTIPASVSTVKGTNQQGAGYCAKTDSQGNHSHSLSGTAASAGAHTHNVAVGAHTHTVGIGAHTHTVALGSHSHTITVNATGNTENTVKNVAFNYIVRLA

Physico‐chemical properties

protein length:	1084 AA
molecular weight:	114285,13500 Da
isoelectric point:	8,42913
aromaticity:	0,07749
hydropathy:	-0,34004

Domains

Domains [InterPro]

DC_0538
STR
1–1082

DC_0538

IPR048390
ATT
509–645

IPR048390 IPR051934

SSF88874
STR
833–990

SSF88874 SSF88874

IPR037053
ATT
839–892

IPR037053 IPR005003 IPR005003 IPR005003 IPR005003 IPR005003 IPR005003

IPR011083
ATT
844–891

IPR011083

UPW39410.1

1 1084

Architecture

STR

ATT

STR

ATT

STR

STR 1-508 | ATT 509-645 | STR 646-838 | ATT 839-892 | STR 893-1083 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0538	STR	DC_0538	1	1082	Novel HMM	DC_0538	Central	Low	Positional only	380 proteins / 380 hits
IPR048390	ATT	DC_0836	509	645	InterPro cluster	Long-tail fiber proximal subunit, trimerization domain	C-terminal	Medium	Text match	656 proteins / 656 hits
IPR051934	Unmapped	-	821	1084	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
SSF88874	STR	SSF88874	833	990	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	839	892	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	844	891	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
IPR005003	Unmapped	-	906	916	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
IPR005003	Unmapped	-	949	961	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
IPR005003	Unmapped	-	962	970	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
SSF88874	STR	SSF88874	1005	1083	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR005003	Unmapped	-	1010	1023	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
IPR005003	Unmapped	-	1025	1033	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
IPR005003	Unmapped	-	1043	1051	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

UPW39410.1

1 1084

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	893	893	0,0506
Central domain	894	1073	181	0,1092
C-terminal	1074	1084	10	0,9960

Note: Constraints were applied during segmentation.
Fixed 230 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-893

Central
894-1073

C-terminal
1074-1084

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Escherichia phage vB_EcoM_ESCO47 [NCBI]	2918870	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	No host information

Coding sequence (CDS)

Genbank protein accession

UPW39410.1 [NCBI]

Genbank nucleotide accession

OM386662 [NCBI]

CDS location

range 99420 -> 102674
strand -

CDS

ATGGCTACTATTAAGCAAATACAATTTAAAAGAAGCAAAGTAGCTGGTGTTAATCCAACAGCTGCGCAATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGATCGTACTATTTTTACAAAAGATGATTTAGGCAATATTATTAACCTTGGGTTCGCTAAAGGTGGGGATATTAATGGTAATGTAACTCATGTAGGTAACTATACTCAGACAGGTACATTTAATTTAATAGGCTCACAAAATGTTGCATCAGGTGGATATATCGAATTTGCTTATAAGGGCACCGGAGTTGGTTCTTGGGCCGGTCAACACACGGCAAAAGCCCCTATTTTCATGGATATTTCCGCATCAACCGCTACTTCAGAATATAACCCGTTAATTAAGCAACGTTATAAAGATGGTACTTTCTCATTAGGGACCTTAGTTAATGAAGGCTCAATGAAGATGCATTATATTGATGAAACAGGCACTTCGAAATATTGGACTTTCCGACGCGATGGTGGATTTACGGTTGATTCTGGTAGCTTGGTTGTTGCAACAGGTAATATTTCTGCGTCAGGCAATATTAACTCCGCTACTGGTATAGTTTCTGCTCCACAAGTTAATACGAAAACCATTGTTTTAGACACAAAAGCATTTGGACAATACGATTCGCAATCATTAGTTCAGTATGTTTATCCTGGCACAGGTGAAGAAAACGGTATTAACTATCTTCGTAAATTCCGCGCAAAATCCGGCGGCACGATTTATCATGAATTAGTTTCTTCACAAACTGGTAAAAGCGAAGAGATTTCTTGGTGGACAGGTGACACCGCGATTAATAAACGGATGGGTCTTCGTAATGATGGATCTTTAGTATTACGTCGTTCTCTCGCAATTGGCACAATTACCGCAGATGAAAACATTAATAACTATGGTTCAACTGGCGCTATGGGCGAATGTTATATAGTTCTAGGGGACCCATCTACTGGATTCAAATCTATCGCTTCAGGTAAAATTGATTTTGTTGCACAAGGTACTTCTACTGCGACTTTAACAAATGGGGTATTTTTAAGTACGAAACGTTTGACTGTCGGTCGCTCAGATGACTCTGGTGCCACCTGGGTAATGCCTGGAAATAACGCTTCTGTTTTAACAATTCAAACAACTCCTGATGGTAATGCTAACGGTGATGGACAAACTCATCTTGGGTATAATAGTAATGGTAAGTTTTATCATTATTTCCGTGGCACAGGACGTATGGCAGTATCTATGTCCGAGGGTCTTATTGTTGAACCTGGCATATTAAACATCAAAACCGGTAATAATGAATTAAATCTTAGGGCTGATGGTACCATCTATTCAACCCAACGTATTTCTATACGATCCGGCATGTATTTTGCAGGTGACGATAATACGTCGGCTTTAACATTTAAAGCTCCTACAGGGGTAGACGGCACAAAACAAATCTTGTGGGAAGCTGGTTCTAGAGCAGGACAGAATAAAAGTTATGTGACTGTTAAAGCTTGGGGTAATAGTTTTAATGCTACCGGTGACAAAGCGCGCGAAACAGTATTCGAAGTTTCTGATGGACAAGGATATTATTTTTATTCACAGCGTATGGCTCCAAGTGGCTCTGAAACTACTGGGCCTGTTGTATCCCAGTTCAATGGACAAGTTAATGCTAACGGCTCTATTAACACTGCAGGAAGTCTTAAAGTTGATGGTTTGAGCACTTTAAATGGTGCAGTTACCATGAGCAATGGACTTAGTTTAACAGGCGGTTCTTCTATTAGTGGTCAAGTTAAAATTGGTGGAACTAATGATGCATTAAGAATTTGGAATGCCGAATACGGTGCTATTTTCCGCCGCTCTGAAGCAGCATTGCATATTATTCCAACTCCCAAAGATGCTGGTGAAAGCGGTGGAATAAGTAATCTCCGCCCATTAAGTATTAGTCTTAATAATGGCATGGTACAAATGCGTCATACCGTTACATTAGGTGATGATGGTGCCGGCGGTAATATGGTCACCGTAGACAATGATACAAAACTCGTTGTGTTGACCACTAATTCGCGTATAAGTCCTAATTTCCGTATGCAATTAGGGCAGTCGACATATATTGATGCTGAATGTACTGATATTGTTAAACCAGCAGGGGCTGGTTCATTTGTCTCGCAAAATAATGAAAATGTTCGTGCCCCATTCTACATGAATATTAATCGTACAGATACAAGTACTTACGTTCCTATTTTGAAACAACGATATGTCCAGGGCGATAGTTGTTATTCTTTGGGTACATTAATTAGTACGGGTGATTTTAGAATTCACTATCATGAAGGCGGTGATAATGATTCAACAGGTCCACAAAAGGCGGATTTAGCATGGCAATTTAGACGTGATGGCTCGTTCCGTTCACCTAATAAAATTGAAATTAATACCGTTATAATTGGTACTGATGGTAATATCACAGGTGGTACTGGTAACTTTGCTAACCTAAATACGACGATAAATAGTCTTAAGACGGATATCATCTCTAGTTATCCGATTGGTGCTCCGATTCCATGGCCAACTGATACACCTCCTGTGGGTTATGCTATTATGGAAGGCCAGACTTTTGACAAAGCGGCGTATCCTAAATTAGGTGCAGTATATACTTCAGGAACTATTCCTGATATGCGTGGACAAACTATTAAAGGTAAACCGAGTGGTCGTGCAGTGTTGAGTACAGAAGCAGATGGTGTTAAATCTCATACCCATAGTGCTTCTTCTAACTCGGTTGATCTAGGTACAAAAACGTCGTCAAGTTTTGACTACGGTACTAAGACAAGTTCGAGTTTTGACTACGGTACCAAATCTGCTGCTTCAGCTGGTGCGCATACACATAGTCTGAGCGGTTCCACAAACTCAACCGGCGCCCATGCTCACACAGATGGTTTAAGGATGAGCAGTAGTGGTTGGAGCCAATACGGAACAGTAACCATTCCGGCAAGTGTATCCACGGTTAAAGGAACCAACCAGCAGGGAGCTGGTTATTGTGCGAAAACAGACAGTCAGGGCAACCACAGTCACTCTTTATCTGGTACTGCTGCTTCGGCTGGAGCACATACACATAACGTGGCCGTTGGTGCTCATACGCATACTGTAGGTATTGGTGCTCATACACACACCGTTGCATTAGGCTCACATAGTCACACAATAACAGTTAACGCAACAGGTAATACAGAGAACACTGTTAAAAACGTTGCGTTTAACTATATCGTTCGTTTAGCTTAA

Genome Context

Tertiary structure

PDB ID

ba90531746fea990cfa281d1c49ae65213585837053f66e453e527260e12f60c

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,2801

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Avian Pathogenic Escherichia coli bacteriophages	Nicolas,M., Trotereau,A. and Schouler,C.	2015-06	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature