Protein

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Genbank accession
YP_007674333.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MSLVSGITESLSNTKSETEIGIGGYRLFARVRETINYRNIVPTDTLEDGSNSTDDIINEPITISIEGVVSDLFVEDKQYPQLISKDFSSVGEVTALLPAKSQQQIQRISQIDSQIRDAVLAAERAERLAGKPYEFFGNSGNSAKTEQEKFIDFMEALYFSRQPTEVSVNFRDYKNMALVSFIPVRDNNTKDTRFTADFQQINYSTLVYTPVSSPSKSVAGKVSDASSKGGQNPESNETGERSLLSSLIGG
Physico‐chemical
properties
protein length:250 AA
molecular weight: 27524,19550 Da
isoelectric point:4,74267
aromaticity:0,08000
hydropathy:-0,42760

Domains

Domains [InterPro]
DC_0601
STR
1–250
DC_0601
IPR048494
ATT
31–211
IPR048494
YP_007674333.1
1 250
Architecture
STR
ATT
STR
STR 1-30 | ATT 31-211 | STR 212-250
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VBM1
[NCBI] 		754074 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus RIMD 2210633
[NCBI] 		223926 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007674333.1 [NCBI]
Genbank nucleotide accession
NC_020850.1 [NCBI]
CDS location
range 15843 -> 16595
strand -
CDS
GTGAGTCTAGTTAGCGGAATTACGGAATCTTTAAGTAACACAAAATCTGAGACTGAGATCGGGATTGGCGGATATCGACTTTTTGCAAGAGTAAGAGAAACGATTAATTATAGAAATATCGTTCCTACAGATACACTTGAAGACGGCTCAAACTCAACGGATGATATCATTAATGAGCCGATAACGATCTCTATCGAGGGCGTTGTTAGCGATCTGTTTGTGGAAGATAAGCAGTATCCTCAATTGATCAGCAAGGATTTTTCATCCGTTGGTGAGGTAACCGCACTACTGCCAGCAAAAAGCCAGCAACAGATACAAAGAATTAGTCAAATTGACTCGCAAATAAGAGATGCAGTTTTAGCGGCGGAACGGGCAGAAAGACTTGCCGGTAAGCCGTATGAATTTTTTGGCAATTCAGGAAATTCAGCAAAAACCGAACAGGAGAAATTTATTGATTTCATGGAGGCTTTGTATTTTTCAAGACAGCCGACGGAAGTTTCAGTAAATTTCAGAGACTATAAAAATATGGCTCTGGTTAGCTTTATTCCAGTTCGTGATAACAACACCAAAGACACGAGATTTACCGCTGACTTTCAGCAAATAAATTACTCAACTTTGGTTTACACTCCGGTATCAAGTCCATCAAAATCCGTCGCCGGAAAAGTTTCGGATGCATCAAGCAAGGGCGGACAGAATCCAGAGTCAAACGAAACTGGCGAGAGATCATTACTTAGCAGCTTGATAGGTGGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
919d13471a06526b83174b4d4c7df1bfda5ba86b8ad34b6f8e82e2550ba5ad0c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7551
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage VBM1 Henn,M.R., Wharam,S., Gilg,I., Martinez Martinez,J., Wilson,W., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank