Protein

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Genbank accession
XKC19576.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSDYAYPYDPAGTNPACLVKGEQHKLEDYPNKWGCIIPLFAPFYRKDLTLRHVEEDRPLYEGIDYYLGHYYEAASVENKMPIFGSVMIIDQTLSGTIEFVKYRTLGGRYNMLKRIIDVHLNQVDLRDPRNLDWEDVMRYEMAIPSVDAPENIDEAIANDLPTGALDRVRKALERLNEAQKQGYDNVIEALVSLTDKIHAHDVDNHESKRGRHRITAEQLGALHRDATAVDSVKAYGYVLADLVTLINLLGENAEDTDNLFRLIGDSLEGRVRFDGSNVVIRNENGAAVISLVNGDLNIVSNSNIILDGDAANSNDNISSSLRAGDNLLSVHSDAGNDNTAVYNGFFLIHVGNIADFMPPPDYVDTIIHTGETETVYLTGRGIKGSPLTGYATFPEVATDTNGVYRLSHSIYSSDKSRAASGRALYRLNQLVSGKLDNTFTINGHRLNKDITITASDLGLGKVNNTAPGDKPASNAFKSEAAKKANASHTHDPSDFKNIPLANHDTYGLTKITPTRSGRTDIAATPSMLNDPYQEQLVAENNLSGKMPSLPFDIMQYGGFGYLPLPVLGSYGAAGTGSGVAVGCIEADGRLVLLRNGADHATRGVYYWYGEFKTDGSFSKTVTTTTEYRPSFIEDGDRVSHVHRGSDSVFPLSTINGKYYLVLTRSTMDMTKHVGTEIVNLNGCPLGNGCSIFLYKNEVHFHYHYFGNGGSYSRHWKAKISDIEAGRPITLERVGLNGDDWNGKSQSDIDTFFFTNIGQSTTLDGGKPIIHRRDNGHWTGSNNVRHSTQNSMFYIKDNKLRVQVYGRTYYSRSDGSTGYPLSHSFVLDLDTMQMVSDNADCFPIELYNNRWAMPAGKSAPAEAWVGANPNNNAPVLISKDRMFAFRFYGTTYIPRVYEFGSADGLEIFDYIEAGKSRPTTIAAADLEGAYGSVVGAGTKFMGFLPGNKLISDQTDGRDTICTYDMNGSYVEDGTGWGPTPDRRLLPSGENARMLRVPMNWETNRNEGFVLSSSYKSSMSKIVNETATTEVTWTDNLINDLRTRFRALHTATDGRSLWDDRVMLQVFGDWEAGANTLDCFIQYTYVHWANPEKTSRRVFTALHKCTIGMSGNTVTSVNIGDLITNANWNNSVTSWGSYESFGMNTCGVTDDGHKVFCLNHSLYVNYVGHSGGHIFQFVLDKDDGSVLHFRNRNAHTHVMYASYWHPDLGLVDTVNEYSAQVVSAKSLGRTVAEIQGNSYRSSQIIHATQVASGWVVYFTEEARFYVSGEEVTLPVQNFDLSKLSGFPSYQNKTFYIYVSVSYDSNGNGVGSYRFSLTKTEDTDTEMYIGYAITNDTQIVELKVSRATRLGTLYELEDHEYDQRAHNDITDLDKHSFSLGNVENMGMIHTLTLPTFKEVFDTWDRISHFKDSAQQPHNPGELNSWTYTEATDTLKCTINSATFVGFVSPAPVGDYVFDTLVGSPDGDNDGLVIILAFVEDAQGIEHTICAVRARSTEAHMVINGRFDIWYDYHLPSRKLIRTGGGTSSVGGWSGNYSRITAVRSGDKFTVSATNFVKSTNLEDHGKSAIELVHEFDLQEFTELQQFRSGGRFGYGCMSQPNSTFINILRPDENVGNYYASADTIRILSERQAESVKFATGVIAPGNKIPIPAGFTEADCHAVVAFNTSGSSVKLAYARAWLSGLTVNITTKLKGSAAVTNPAGSTARYYLIARKKPEV
Physico‐chemical
properties
protein length:1715 AA
molecular weight: 189634,89250 Da
isoelectric point:5,57593
aromaticity:0,10262
hydropathy:-0,37248

Domains

Domains [InterPro]
DC_0067
ATT
128–693
DC_0067
DC_0236
STR
534–1365
DC_0236
XKC19576.1
1 1715
Architecture
ATT
STR
ATT 128-693 | STR 694-1365 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XKC19576.1
1 1715
Domain Start End Length (AA) Confidence
N-terminal 1 548 548 0,7456
Central domain 549 783 236 0,8149
C-terminal 784 1715 931 0,4011
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-548
Central
549-783
C-terminal
784-1715

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage pVp-JHP1101
[NCBI] 		3374749 No lineage information
Host Vibrio parahaemolyticus SNUVpS-1
[NCBI] 		1234128 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio > Vibrio parahaemolyticus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XKC19576.1 [NCBI]
Genbank nucleotide accession
PQ451753.1 [NCBI]
CDS location
range 92380 -> 97527
strand -
CDS
ATGTCAGATTACGCTTATCCTTACGACCCTGCCGGAACAAATCCTGCATGTTTGGTCAAAGGGGAACAGCACAAGCTTGAGGACTACCCTAATAAATGGGGTTGTATCATTCCTCTGTTTGCGCCGTTCTATCGCAAAGATCTCACACTACGTCATGTAGAGGAAGATCGTCCCCTTTACGAAGGTATTGACTACTACCTCGGTCATTATTACGAAGCAGCGTCTGTAGAAAACAAGATGCCTATCTTCGGTAGTGTGATGATAATCGATCAAACGTTATCTGGCACTATTGAATTCGTAAAATACCGAACTCTCGGTGGTCGCTATAACATGCTTAAGCGAATCATCGATGTACATCTTAACCAAGTTGACTTACGTGACCCACGTAACTTAGACTGGGAAGATGTCATGCGCTACGAGATGGCTATCCCGTCCGTAGATGCGCCTGAGAACATCGATGAGGCGATTGCTAACGATTTACCAACTGGTGCCCTAGACCGCGTTAGAAAAGCATTAGAGCGCCTTAACGAAGCACAAAAGCAAGGTTACGATAATGTCATTGAAGCTTTAGTTTCACTGACTGATAAAATCCATGCTCACGATGTTGATAACCACGAATCAAAACGTGGCCGACATCGCATTACAGCAGAACAACTAGGTGCATTGCACCGTGATGCCACTGCGGTTGATTCCGTAAAAGCCTACGGTTATGTTCTTGCTGATTTGGTAACACTTATTAACCTACTAGGTGAGAATGCGGAAGATACGGATAACCTATTCCGTCTAATCGGCGATTCACTAGAAGGGCGTGTTCGTTTTGATGGCTCAAACGTAGTCATTCGAAATGAAAATGGTGCAGCAGTTATTAGTTTGGTTAACGGTGACCTAAACATCGTATCTAACAGTAACATCATCCTAGATGGTGATGCTGCTAACAGTAATGACAACATCTCATCGTCTCTACGTGCAGGTGATAACTTACTGTCTGTCCACTCTGATGCAGGAAATGACAACACAGCAGTTTATAACGGGTTCTTCTTAATCCACGTTGGTAACATTGCTGACTTCATGCCGCCGCCTGATTATGTAGATACGATCATCCATACTGGTGAGACTGAAACGGTTTACTTAACAGGTCGTGGTATTAAAGGCTCGCCATTAACAGGCTACGCAACGTTCCCTGAGGTAGCTACTGATACAAACGGTGTCTATCGTCTAAGCCACTCTATCTATTCGTCTGATAAGTCACGTGCGGCTTCTGGTCGTGCTCTGTATCGTCTTAATCAGTTAGTGAGTGGGAAATTAGACAATACCTTTACTATTAATGGTCATCGACTTAACAAAGACATTACAATCACGGCGAGTGATTTAGGTCTAGGTAAAGTCAACAATACGGCACCGGGCGATAAACCTGCTAGTAATGCGTTTAAGTCAGAGGCTGCGAAGAAAGCAAATGCATCGCACACTCATGATCCAAGTGACTTTAAGAACATCCCACTTGCAAACCATGATACCTACGGTCTGACTAAGATAACGCCAACACGTTCAGGTCGTACTGACATTGCGGCAACGCCGTCGATGTTAAACGACCCTTACCAAGAGCAGTTAGTTGCAGAAAACAACTTAAGTGGTAAGATGCCATCGCTACCATTTGACATTATGCAATATGGTGGGTTTGGTTATCTCCCATTACCTGTGTTGGGTTCATACGGTGCAGCAGGTACAGGTTCTGGTGTTGCAGTAGGTTGTATTGAAGCCGATGGTCGTCTCGTGCTATTACGTAACGGTGCTGACCATGCAACTCGTGGTGTGTATTATTGGTACGGTGAATTTAAGACGGACGGCTCGTTCTCTAAAACCGTAACAACGACGACTGAATACCGTCCAAGCTTTATTGAAGACGGTGATCGTGTAAGCCACGTCCATCGTGGTAGTGATTCAGTATTCCCATTGTCTACAATCAACGGTAAGTACTACTTAGTACTGACACGTAGTACCATGGATATGACTAAGCACGTTGGTACTGAAATTGTTAACTTAAATGGCTGTCCGTTAGGTAACGGTTGTTCTATCTTCTTGTATAAGAATGAAGTTCACTTCCACTACCACTATTTTGGTAATGGTGGTAGCTATAGCCGACACTGGAAAGCTAAGATTTCAGATATCGAAGCAGGTCGTCCAATCACGTTAGAACGTGTGGGTCTAAATGGTGATGACTGGAACGGTAAGTCACAAAGTGATATTGATACGTTCTTCTTTACTAACATCGGTCAATCAACAACTTTGGATGGTGGTAAGCCAATCATTCACCGTCGTGATAACGGTCACTGGACGGGGTCAAATAACGTTCGCCACTCAACGCAAAACTCAATGTTCTATATTAAGGATAATAAGTTACGCGTTCAGGTTTACGGTAGAACGTATTACTCGCGTTCTGATGGTTCGACAGGTTATCCGTTATCACATTCGTTTGTGTTGGATTTAGATACAATGCAGATGGTGTCGGATAATGCAGACTGTTTCCCAATTGAGTTGTATAACAACCGATGGGCGATGCCTGCGGGTAAGTCTGCTCCTGCTGAGGCGTGGGTTGGTGCCAACCCGAACAACAACGCTCCGGTGTTAATCAGTAAGGACAGGATGTTTGCATTCCGTTTCTACGGTACAACATACATTCCAAGAGTGTATGAGTTCGGTTCAGCTGACGGGTTAGAAATCTTCGATTATATCGAAGCAGGTAAGTCAAGACCGACAACTATTGCAGCTGCTGACTTAGAAGGTGCTTACGGTTCTGTGGTGGGTGCAGGTACTAAGTTCATGGGTTTCCTACCGGGGAACAAACTTATCAGTGATCAAACTGATGGTCGTGATACGATATGTACTTATGACATGAACGGTAGTTACGTAGAAGACGGTACAGGTTGGGGTCCAACTCCAGACCGCCGTTTGTTACCTAGTGGTGAGAATGCAAGAATGCTTCGAGTGCCAATGAACTGGGAAACAAACCGTAACGAAGGTTTTGTATTGTCATCGTCGTACAAATCAAGTATGTCAAAAATAGTCAATGAAACGGCAACGACTGAAGTGACTTGGACGGATAACTTGATTAACGACCTACGTACACGATTTAGAGCACTGCATACTGCAACAGATGGTCGCTCTCTTTGGGATGACCGTGTAATGTTACAAGTGTTCGGTGATTGGGAAGCGGGCGCTAATACACTTGACTGCTTTATCCAATACACCTACGTGCACTGGGCAAATCCTGAGAAGACTTCACGCCGTGTATTTACAGCACTGCATAAGTGTACGATCGGTATGTCGGGTAACACCGTAACGAGTGTGAATATTGGCGACTTAATTACTAATGCTAACTGGAACAACTCTGTGACCAGTTGGGGTTCGTATGAATCGTTCGGTATGAATACATGCGGCGTAACTGACGATGGGCATAAAGTGTTCTGTCTTAACCATTCGCTGTATGTAAACTACGTAGGTCACTCAGGCGGTCATATCTTCCAGTTTGTTCTGGATAAAGATGATGGTAGTGTTCTACACTTCCGTAATCGTAATGCTCACACGCACGTGATGTACGCATCGTACTGGCATCCGGACCTTGGTTTGGTGGATACGGTGAATGAATACTCGGCGCAGGTTGTTTCGGCTAAGAGTCTAGGTCGTACAGTTGCGGAGATTCAGGGTAACAGTTACCGTAGTTCTCAAATCATTCATGCTACGCAAGTAGCGTCTGGTTGGGTGGTTTACTTTACCGAGGAGGCAAGATTCTACGTTAGTGGGGAAGAGGTTACACTCCCTGTACAAAACTTTGACTTATCGAAGTTGTCAGGATTCCCAAGTTACCAAAACAAAACGTTCTATATCTACGTAAGTGTATCGTACGATTCGAACGGTAATGGTGTTGGTAGCTATCGTTTTAGTCTAACGAAGACTGAAGATACCGATACAGAGATGTACATCGGTTATGCGATTACTAACGATACCCAAATTGTAGAATTGAAAGTTTCGCGTGCTACACGTTTAGGTACGTTGTATGAGTTGGAAGACCACGAGTATGATCAGCGTGCGCATAATGACATCACTGACCTTGACAAACACTCATTTAGTTTGGGTAATGTTGAGAATATGGGGATGATTCATACGCTAACGCTACCTACCTTTAAAGAAGTATTCGATACTTGGGATCGTATCTCCCACTTTAAAGATAGTGCGCAACAGCCACACAATCCAGGTGAGTTAAACAGTTGGACGTATACTGAAGCAACTGATACGCTTAAGTGTACAATCAACTCTGCAACGTTCGTAGGTTTCGTAAGCCCGGCTCCGGTTGGCGATTACGTCTTCGATACGTTAGTAGGTTCACCTGATGGTGATAACGATGGCCTAGTAATCATCCTAGCGTTTGTTGAAGATGCTCAAGGTATTGAACACACCATCTGTGCAGTACGCGCACGTTCTACCGAAGCGCATATGGTAATTAATGGACGATTTGATATTTGGTATGATTACCACTTACCATCTCGTAAATTGATTCGTACTGGCGGTGGTACTTCAAGTGTTGGTGGTTGGTCAGGTAACTACTCACGTATTACTGCGGTTCGTTCTGGCGACAAGTTTACAGTTTCGGCTACAAACTTCGTCAAGAGTACAAACCTAGAAGACCATGGTAAGAGTGCAATTGAATTAGTCCATGAATTTGATTTGCAAGAGTTCACTGAACTACAGCAGTTCCGTTCAGGTGGCAGATTCGGTTATGGTTGTATGTCACAACCAAACTCAACGTTTATCAACATCCTTCGTCCTGACGAAAACGTTGGTAACTACTATGCGTCTGCGGATACCATCCGTATCCTCTCTGAGAGGCAAGCAGAGTCCGTTAAGTTCGCTACTGGTGTCATTGCTCCGGGTAACAAGATTCCTATCCCTGCGGGCTTTACAGAAGCCGATTGTCATGCAGTGGTAGCATTCAACACAAGTGGGTCTAGTGTTAAACTGGCTTATGCTAGAGCTTGGCTATCGGGACTTACTGTCAACATTACAACTAAGCTTAAAGGCAGCGCGGCTGTAACTAATCCTGCGGGCAGTACTGCTCGTTACTATCTAATCGCCCGTAAGAAACCAGAGGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
25dbc59ef16d2a154c10a0f6b130803b8b4752faab6f665c1ace337eba141646
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5520
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of Vibrio phage pVp-JHP1101 Park,J.H., Kim,S.G. and Park,S.C. 2025-12 — GenBank