Protein

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Genbank accession
XYM49444.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,57
Protein sequence
MDFTSSYGRPIQGVSQQPPQVRQDGQCTTQVNCIPSAVDGLKTRVSSQLISVLMDAIGVNDKVYFYRRDKDEAYVIIMHERGLPSIYTLDGDACNVTGDATYLELGQTPPMDRFAMTTVGDYTFIVNREVHVGVRADTAPAPLKQAIVTVGYCSYGRTYKLIINGTKTFEYKAPSGATATDIDKVDTTYVAGELFKKLQADATLTVQQDGPYLYVNMLDQSDFTIKSEDGAGGKDLMVTKGIVDKLSEVPAHAPDNTYVAIKADGTTEAAEFYLKVDGQREDGRANWVETSKAGTLMGFDKATMPHTLVRDRIDSNGVAQFIIAEGNWLDRAVGNDKSNPLPSFYNKDDPKPITSIGVFQNRLYVTSGENLITTRTDDYFDFFRFTAQKELDTDPIDIYSDTKTVNLIKSSAMIGGNLVLFADNSQFMLDGSVPQTKKTATLTVISEYECVSNIKPVSSGDNLFFPFTYGRFGGVREMFVDNTTGIKRARPVTDHVNQYIDGHIRHMAGSTNINTLFVSATGQPNKLYVYDWIWVGDEKMQSAWHEWTFPRDASIIGFEYINNKLYVVSNQNGKCILESFDMSNPPQYNLDFHIAMDRQYTMDFTWNDSLQRWDGTALKHIPIDLDKIEVILIDADNPLNNGNTINVDYDKDHNTLSTTYPLSSDNTRKVRTAVGELFEVVYEPTPPQLRDYKGNVSTIDEMILGSLYFNFDHVGHFKVEVDDIYGEKWVGDFNNRRMNAPNNIVGFAPLKDIVEEVPVRKLAKEIKYRIRTLTHIEMQLRVIEWTGISNPSKRRR
Physico‐chemical
properties
protein length:796 AA
molecular weight: 89529,70480 Da
isoelectric point:5,15333
aromaticity:0,10176
hydropathy:-0,39372

Domains

Domains [InterPro]
IPR058003
TTP
4–793
IPR058003
XYM49444.1
1 796
Architecture
TTP
TTP 4-793 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM49444.1
1 796
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9907
Central domain 140 350 212 0,1191
C-terminal 351 796 445 0,2427
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-350
C-terminal
351-796

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage BD5
[NCBI] 		3411690 Viruses >
Host Vibrio vulnificus
[NCBI] 		672 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM49444.1 [NCBI]
Genbank nucleotide accession
PV244425 [NCBI]
CDS location
range 30729 -> 33119
strand +
CDS
ATGGACTTTACATCCTCCTATGGCAGACCTATTCAGGGTGTGTCACAACAGCCACCACAGGTAAGACAGGATGGACAGTGCACAACTCAGGTTAACTGTATCCCTTCTGCTGTGGATGGATTGAAGACCCGTGTTAGCTCACAGCTAATCTCGGTACTAATGGATGCAATCGGTGTGAATGATAAGGTGTACTTCTATCGTCGAGATAAGGATGAAGCCTATGTAATCATCATGCATGAGCGTGGGCTACCTAGTATCTACACACTAGATGGCGATGCCTGCAATGTGACGGGTGATGCAACCTATCTTGAGTTAGGGCAGACACCACCTATGGACCGATTTGCTATGACAACGGTTGGTGACTATACCTTCATTGTGAATCGTGAGGTTCATGTTGGTGTACGTGCTGACACAGCGCCAGCCCCATTGAAGCAAGCCATCGTAACTGTAGGCTACTGTTCCTATGGTAGAACCTATAAGCTTATCATCAATGGGACGAAGACCTTTGAATACAAGGCACCTTCAGGCGCTACTGCTACTGACATCGATAAGGTTGATACAACCTATGTTGCTGGTGAGTTGTTCAAGAAGCTACAGGCAGATGCGACACTAACTGTCCAACAGGATGGACCTTACCTTTACGTTAACATGCTGGACCAATCGGACTTCACTATTAAGTCGGAAGATGGTGCAGGTGGTAAGGACCTTATGGTAACTAAAGGTATCGTGGATAAGCTGTCTGAAGTTCCAGCTCATGCACCAGATAATACCTATGTTGCTATCAAGGCTGATGGTACTACTGAGGCTGCTGAGTTCTACCTTAAGGTGGATGGTCAACGTGAAGACGGACGAGCCAATTGGGTGGAGACATCCAAGGCAGGTACGCTAATGGGATTTGATAAGGCAACCATGCCTCATACGCTAGTGCGTGATAGAATCGATTCCAATGGTGTAGCTCAGTTTATTATAGCTGAAGGCAACTGGCTTGACCGTGCTGTTGGTAATGACAAGAGTAACCCTCTTCCATCGTTCTATAATAAGGATGACCCTAAGCCAATCACATCAATCGGTGTGTTCCAGAACCGACTCTATGTTACATCGGGTGAGAACCTGATTACTACCAGAACAGATGACTACTTTGACTTCTTCAGATTCACTGCTCAGAAAGAACTAGATACCGACCCTATCGATATTTACTCTGATACTAAGACAGTGAACCTGATTAAGTCCAGTGCAATGATTGGTGGTAACTTGGTATTGTTTGCTGACAACTCGCAGTTCATGCTAGATGGTTCAGTACCTCAAACCAAGAAGACAGCAACACTTACTGTTATCAGTGAGTACGAATGTGTGTCTAACATCAAGCCTGTATCTTCAGGTGATAACTTGTTCTTCCCATTTACCTATGGTCGCTTCGGTGGTGTTCGTGAGATGTTTGTTGATAACACAACAGGTATCAAACGTGCACGTCCAGTGACAGACCATGTTAACCAGTACATCGACGGGCATATTAGGCACATGGCTGGCTCTACCAATATCAACACGTTATTCGTGTCTGCAACTGGTCAGCCTAATAAGCTCTATGTTTATGACTGGATTTGGGTAGGTGATGAGAAGATGCAGTCTGCATGGCATGAGTGGACTTTCCCAAGAGATGCATCCATTATCGGGTTTGAGTACATCAACAACAAACTCTATGTTGTGAGTAACCAGAACGGTAAATGTATCCTTGAGTCCTTCGACATGTCAAACCCTCCACAGTACAACCTAGACTTCCACATCGCAATGGACCGTCAATATACGATGGACTTCACGTGGAATGATAGCTTGCAACGGTGGGACGGTACTGCATTGAAGCATATCCCAATCGACCTAGATAAGATTGAAGTTATCTTAATCGATGCGGATAACCCACTGAACAACGGAAATACAATCAATGTTGACTATGACAAGGACCACAACACATTGTCAACTACCTATCCCTTATCTAGTGACAACACTCGTAAGGTACGGACTGCCGTTGGTGAGCTGTTCGAAGTGGTGTATGAACCTACACCACCACAATTGAGAGACTACAAAGGAAATGTGTCTACCATTGATGAAATGATTCTAGGTTCACTATACTTTAACTTTGACCACGTTGGTCACTTCAAGGTAGAGGTCGATGACATCTACGGAGAGAAATGGGTTGGAGACTTCAACAATAGACGAATGAATGCACCTAACAACATTGTAGGCTTTGCACCATTGAAAGACATTGTGGAAGAAGTTCCAGTCCGTAAGCTGGCCAAGGAAATCAAGTATCGTATTCGGACCCTAACACACATCGAAATGCAATTACGTGTTATCGAGTGGACAGGGATTAGTAACCCTAGCAAGCGGAGAAGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3d284cfee90ea126385ace4fa9a77dd21c836767f1a3d3167bcd106390448a29
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8755
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50