Protein

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Genbank accession
YP_013435401.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,77
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MVTKTVIPTDITKLKNESLNKNNNLSDLADRAAAWLNVRPIGSTPLAGDPVGDYDAATKRWVENKINTGTVGPTMSGVMNYGVGDFHLRDSRAYIQPYEVVSDGQLLNRADWPELWAYAQMVGAIDDSVWLGDKFQRGKYSSGNGTTTFRVPDRNGVQSGSVYGLFARGDGGQSSINGAIYESGAPNIVFTSPHTMVTLASAAGQVATIGALQSTTSSDAPAPVGSGGRYINTNFDASRCSSIYGRTVSELRPNNFIGVWVIRASGGFVAAKTSWSVISGDAVKPNTGTTVYGGSVLSEYKVGTSSEAVSTLRAKATIGGTYSTELLIDNKSTGKSNSAQLVDNGDFVTDRFKARLVTGMAWSQTGWVQGTLSQNEVNIGSTFNFNSILSGSQSSSAGYKTSAHFGLIHNDLGSFADSCWQVAGDDDNKFGVRLKIQPNNNSIYFYSWWPGASATYTLQLNAVSDSRLKHDIKAIDATKSIEVLKGLEFQSFVYNNDEKSRVRRGVIAQQVETIEPLYVKTRRFYNDDGIEQEQKELDTTPMLLDTMHVVQDLIKRIEDLEKELEQLKVQLVSQ
Physico‐chemical
properties
protein length:574 AA
molecular weight: 62300,64280 Da
isoelectric point:5,82045
aromaticity:0,08885
hydropathy:-0,33293

Domains

Domains [InterPro]
DC_1651
STR
9–515
DC_1651 Coil
Coil
Unmapped
11–31
Coil SSF88874 IPR030392
IPR030392
CHP
464–564
IPR030392
DC_0409
RBD
495–574
DC_0409
YP_013435401.1
1 574
Architecture
STR
RBD
STR 9-515 | RBD 516-574
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_013435401.1
1 574
Domain Start End Length (AA) Confidence
N-terminal 1 280 280 0,3390
Central domain 281 479 200 0,1078
C-terminal 480 574 94 0,9980
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-280
Central
281-479
C-terminal
480-574

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage IrisVonRoten
[NCBI] 		2852004 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus irisvonroten
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_013435401.1 [NCBI]
Genbank nucleotide accession
NC_130053.1 [NCBI]
CDS location
range 25027 -> 26751
strand +
CDS
ATGGTAACTAAAACAGTAATTCCTACGGATATTACAAAACTTAAAAATGAGTCACTTAATAAAAATAATAACCTGAGTGACTTAGCAGACCGTGCAGCAGCGTGGCTAAACGTGCGTCCTATTGGGTCCACCCCTCTTGCGGGGGATCCTGTTGGGGACTATGATGCCGCAACTAAACGTTGGGTAGAGAATAAGATTAACACTGGTACAGTTGGACCCACTATGAGTGGTGTTATGAACTACGGTGTTGGTGATTTTCACCTCCGAGATAGTCGTGCGTATATTCAACCATACGAAGTCGTTTCTGACGGACAGCTTCTTAATAGGGCTGACTGGCCTGAACTTTGGGCGTATGCACAAATGGTTGGGGCTATAGATGATTCAGTTTGGTTAGGAGATAAATTCCAGCGCGGTAAGTACTCATCAGGGAATGGAACAACAACCTTTCGTGTTCCAGATAGAAATGGTGTGCAGTCTGGTTCAGTATATGGTCTATTTGCTCGTGGTGATGGTGGTCAAAGTAGTATTAATGGAGCAATTTATGAATCTGGTGCACCTAATATAGTTTTTACTTCTCCGCATACTATGGTAACGCTTGCTTCAGCAGCTGGCCAAGTTGCAACAATTGGAGCGTTACAATCAACCACGTCAAGTGATGCTCCGGCACCAGTAGGTTCTGGTGGTAGGTACATTAATACAAATTTTGATGCGTCAAGATGTAGTTCTATATACGGGAGAACGGTATCCGAACTACGCCCTAATAACTTCATTGGCGTCTGGGTAATCCGTGCTTCTGGTGGGTTCGTGGCTGCAAAGACTTCGTGGAGTGTTATTAGTGGTGATGCTGTCAAACCTAATACTGGTACTACTGTTTATGGCGGGAGTGTACTATCTGAGTATAAAGTAGGTACTAGTAGTGAGGCTGTAAGTACACTACGAGCTAAAGCTACTATTGGTGGCACCTACTCTACTGAACTACTAATAGACAATAAATCTACCGGTAAATCGAATTCCGCCCAGCTTGTAGATAATGGAGATTTTGTAACGGATCGTTTTAAAGCTAGATTAGTTACTGGCATGGCGTGGTCTCAGACTGGCTGGGTACAAGGTACTCTTTCTCAGAACGAGGTCAATATAGGTAGTACATTTAACTTTAATAGTATATTGAGCGGTTCCCAGTCTTCTTCCGCAGGGTATAAGACATCTGCACATTTTGGATTAATTCATAATGACTTAGGCTCATTTGCAGATTCTTGTTGGCAGGTAGCGGGAGATGATGATAATAAATTTGGTGTGCGTTTAAAAATTCAGCCGAATAATAATAGTATTTATTTTTATTCTTGGTGGCCCGGTGCTTCAGCAACCTATACTTTGCAATTAAATGCTGTATCTGATTCTCGCTTAAAGCATGATATTAAGGCTATAGACGCAACTAAGTCCATCGAGGTATTAAAAGGATTAGAATTCCAATCCTTTGTATATAATAACGATGAAAAATCTCGTGTCCGACGTGGGGTTATTGCTCAGCAAGTAGAGACTATAGAACCACTTTATGTAAAAACTAGAAGATTTTATAATGATGACGGAATAGAGCAGGAGCAAAAGGAATTAGATACAACTCCAATGCTTCTTGACACTATGCATGTTGTGCAAGATCTTATTAAACGGATTGAAGATCTGGAGAAAGAGCTTGAGCAATTAAAGGTACAATTAGTATCACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
34d2d5c8b2819643ea1aea7c339db68e18f56988232d929eeedf4b6d80efd927
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6927
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection Maffei,E., Shaidullina,A., Burkolter,M., Heyer,Y., Estermann,F., Druelle,V., Sauer,P., Willi,L., Michaelis,S., Hilbi,H., Thaler,D.S. and Harms,A. 2021 — GenBank