Protein
View in Explore- Genbank accession
- AFK66646.1 [GenBank]
- Protein name
- hypothetical protein
- RBP type
-
TSP
- Protein sequence
-
MALKLDGIDARLTIPTWGESGDFKINVKFLRTEKFCAILGQDAYSNLHQLYNGKIELNIQGNKVTIDNPPAVGGLFDIWIIRVGNGCTLYVNGEEGYTSCRADRWQVTYFGVHYNGGFSNTWFSDNTFVGQWTFEGATPELNRSYDFEKQYNKDGQPLVYESLKGLSASGFGFGFDSAAAAWGSTPLGSEDIGGDTGGSGDTKEFDELKTYPLGAIVISDMVWVDSKNTWYCVTYSNDANGGTIEKFDKDWNHLGTSHTGIKEYLLSITYDPITNLLYVGSNTGGAYSVSLIDNSSLGSFISLGTSTNSYALEVIGTDTYALDLTSLAIRNTGQSFSANGTTVFSINSISPTNIIDMSWDGEFWNLNSWDNVIRRYDSSWNLVKDIPITLTDSAAKLRRFYYVNNRWWARDSVSNSIIELAGKTSDIDGNLVGTINLLQWGGKDILDVLYSNVLGNYETVQMNLGSVAVWREGTNSVTKVAKSLPYERSGFDGTHLYEGIDQSMYVDDISVDIITIVQHSLSAGIDNVSQSMDVDDISLDIYTITQQSLSAGIENVSQSMNASGIVVDVITIIQQALSAGIENIGQSFTAGIGVTIE
- Physico‐chemical
properties -
protein length: 597 AA molecular weight: 65304,64710 Da isoelectric point: 4,38470 aromaticity: 0,11055 hydropathy: -0,14724
Domains
Domains [InterPro]
SSF63829
STR
205–420
STR
205–420
SSF63829
STR
214–435
STR
214–435
1
597
Architecture
STR 205-435 |
Legend:
ATT
STR
RBD
CBM
LEC
ENZ
CHP
LNK
TAS
TTP
UNK
Unmapped
Tail Spike Domain Segmentation
Tail Spike Domain Segmentation
This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.
Domain Layout
1
597
| Domain | Start | End | Length (AA) | Confidence |
|---|---|---|---|---|
| N-terminal | 1 | 96 | 96 | 0,0333 |
| Central domain | 97 | 401 | 306 | 0,6036 |
| C-terminal | 402 | 597 | 195 | 0,0638 |
Note: Constraints were applied during segmentation.
Fixed 20 C-terminal predictions appearing before Central domain
Fixed 20 C-terminal predictions appearing before Central domain
Legend:
N-terminal
Central domain
C-terminal
3D Structure with Domain Coloring
The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).
Domain Coloring
N-terminal
1-96
1-96
Central
97-401
97-401
C-terminal
402-597
402-597
Taxonomy
| Name | Taxonomy ID | Lineage | |
|---|---|---|---|
| Phage |
Colwellia phage 9A [NCBI] |
765765 | Uroviricota > Caudoviricetes > Franklinbayvirus > |
| Host |
Colwellia [NCBI] |
28228 | Bacteria > Proteobacteria > Gammaproteobacteria > Alteromonadales > Colwelliaceae > |
| Host |
Colwellia psychrerythraea 34H [NCBI] |
167879 | Bacteria > Proteobacteria > Gammaproteobacteria > Alteromonadales > Colwelliaceae > Colwellia |
Coding sequence (CDS)
Coding sequence (CDS)
Genbank protein accession
AFK66646.1
[NCBI]
Genbank nucleotide accession
HQ317390
[NCBI]
CDS location
range 31704 -> 33497
strand -
strand -
CDS
ATGGCTTTAAAATTAGATGGCATTGATGCACGATTGACAATCCCCACATGGGGAGAGTCAGGTGACTTTAAAATAAATGTAAAATTTCTTAGAACTGAAAAGTTTTGTGCTATACTTGGACAAGATGCTTATTCTAACTTACACCAACTTTACAACGGTAAGATTGAATTAAATATTCAAGGTAATAAGGTTACCATAGATAATCCACCTGCAGTCGGTGGGTTATTTGATATATGGATTATCCGTGTAGGTAATGGATGTACATTGTACGTAAATGGTGAAGAAGGTTACACAAGCTGTAGGGCTGATAGGTGGCAGGTAACTTATTTTGGTGTGCATTATAATGGTGGATTTTCCAATACATGGTTCTCAGATAATACCTTTGTTGGTCAGTGGACTTTTGAAGGTGCCACACCTGAATTAAATAGATCCTATGACTTTGAAAAGCAGTACAATAAGGACGGTCAACCGCTTGTTTATGAATCACTAAAAGGTTTATCAGCAAGTGGCTTTGGATTTGGCTTTGATAGTGCAGCAGCAGCATGGGGATCAACTCCTTTAGGTTCTGAAGATATCGGTGGTGACACTGGTGGTAGTGGTGATACTAAAGAGTTTGATGAATTAAAGACATACCCTTTAGGTGCGATAGTTATAAGTGACATGGTGTGGGTAGATTCAAAAAACACTTGGTACTGTGTTACGTATAGTAATGATGCAAATGGTGGTACTATTGAAAAATTTGATAAAGATTGGAACCATCTAGGTACATCACATACTGGTATAAAGGAATACCTTTTATCAATAACTTATGACCCGATAACAAACCTTCTTTATGTAGGATCAAATACGGGTGGTGCTTACTCGGTATCCTTGATAGATAATAGCTCACTTGGCTCATTTATATCATTAGGGACATCTACAAACTCTTACGCACTTGAAGTTATTGGAACTGACACATACGCTCTTGACTTGACAAGCCTAGCTATACGTAACACAGGGCAAAGTTTTTCTGCCAACGGCACTACTGTATTTTCAATAAATTCAATATCACCTACCAATATAATTGATATGTCTTGGGATGGAGAATTTTGGAATCTAAATTCTTGGGACAATGTAATTAGGCGCTATGACTCAAGTTGGAACCTTGTAAAAGATATACCTATTACTTTAACTGACAGTGCAGCCAAGCTTAGAAGATTTTACTATGTAAATAATAGGTGGTGGGCTAGGGATTCTGTAAGTAATTCAATTATAGAACTGGCAGGTAAGACCTCAGATATTGATGGTAATTTAGTTGGAACCATAAATCTTTTACAATGGGGTGGTAAAGATATACTAGATGTATTATACTCCAACGTGTTAGGTAATTATGAAACTGTACAGATGAATTTAGGTTCAGTAGCGGTATGGCGAGAAGGTACTAATAGTGTAACTAAAGTAGCTAAAAGTTTACCTTATGAACGTAGTGGATTTGATGGTACTCACTTATATGAAGGTATTGATCAAAGTATGTATGTAGATGATATATCTGTAGATATTATAACAATCGTACAGCACAGTTTAAGTGCAGGTATTGATAATGTTAGTCAAAGTATGGATGTAGATGATATTAGTTTAGATATCTATACAATAACCCAACAAAGTTTAAGTGCAGGTATTGAGAATGTTAGCCAAAGTATGAATGCTAGTGGTATAGTTGTAGATGTTATAACAATAATCCAACAAGCGTTAAGTGCAGGTATTGAGAATATTGGTCAAAGCTTTACAGCAGGAATCGGTGTTACTATTGAATAA
Genome Context
Genome Context
Tertiary structure
PDB ID
44004b5bfc883909857ca4919cdb9fff536446f8e099800e465c324007f59b7c
Model Confidence
Very high
pLDDT > 90
pLDDT > 90
High
90 > pLDDT > 70
90 > pLDDT > 70
Low
70 > pLDDT > 50
70 > pLDDT > 50
Very low
pLDDT < 50
pLDDT < 50
Literature
| Title | Authors | Date | PMID | Source |
|---|---|---|---|---|
| Genomic analysis of cold-active Colwelliaphage 9A and psychrophilic phage-host interactions | Colangelo-Lillis,J.R. and Deming,J.W. | 2013 | 23224375 | GenBank |
| The Genome Sequence of Collwellia phage 9A | Henn,M.R., Deming,J., Carpenter,S., Colangelo-Lillis,J., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. | 2011-09-23 | — | GenBank |