Protein

View in Explore
Genbank accession
WYA83775.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNEMFSQGGKGSTGILTNKQAVARYFGVKQSEVVYFSVGAVLSGYKVIYDKETQRAYSLPADIAPGTTAISLSTAAVLVHSAGSVDLGALAVSREEYVTLPGSFDSGSTLNVKNELLTYTDGKYRWDGALPKIVPADSTPTTTGGVGDGAWVSVGDAALRSDLSSSSSGRGASLVNLTSGNSVQEEIDFLAYAYGVRLSNYMADPDPLTAALADSRNKKLPLIIDCDATYKTFLVYSNDRIIGCGDHTLTKIGNDKPSIPSAQQPERPSGTTTDFSSIDAGIVIVHPDNGSATNIIISGFNLANTSHCDYAIHCTFMSFTKIEDMKFNGYKRGIKWYNAYGNQLSRIFSLYYYSTSDVFSDFICYDFSDGNYSSGTSNTITNVTCTNYKKCYYVANLNYSTFTNCGGEGVESPTPVSTGNIPQTFEFVNCPNIVLNTPYTENLRGGFIRAVSDASGVYQGASTIVINGPEAVVGITGTTTNVGAKLLDIQGGVNCVVNGGYMTGAASGYFLEFGGADGDATLLINGMEMRNVLEQIRSHFGYNGINSIKGLRPMQLLRKGIGDATGTGIVNWKTASEDQYFMGGGNFTKTALGGYYQVDVEVPIGTNATGGEVTLLLSDTDTDSGVAIAQCYVPAVSTGRYSARLRYEGRLPGGKFLYVKTTVGWSSVYDTDAVFNVILK
Physico‐chemical
properties
protein length:680 AA
molecular weight: 72477,16730 Da
isoelectric point:5,07614
aromaticity:0,10294
hydropathy:-0,09794

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–95
G3DSA:3.30.2020.50 G3DSA:2.10.10.80
DC_1953
STR
1–674
DC_1953
IPR040775
RBD
91–156
IPR040775
WYA83775.1
1 680
Architecture
ATT
STR
ATT 1-166 | STR 167-674 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYA83775.1
1 680
Domain Start End Length (AA) Confidence
N-terminal 1 201 201 0,9948
Central domain 202 554 354 0,9945
C-terminal 555 680 125 0,9849
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-201
Central
202-554
C-terminal
555-680

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage GSP004
[NCBI] 		3135197 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYA83775.1 [NCBI]
Genbank nucleotide accession
PP533474.1 [NCBI]
CDS location
range 141282 -> 143324
strand -
CDS
ATGAACGAAATGTTTAGTCAAGGTGGTAAAGGTTCAACTGGAATCTTAACCAATAAACAAGCAGTAGCCCGTTACTTTGGGGTTAAGCAGAGTGAGGTAGTTTACTTCTCCGTCGGTGCTGTACTAAGTGGATATAAAGTTATCTATGACAAGGAAACGCAGAGAGCTTATTCCTTACCTGCTGATATTGCCCCAGGTACTACAGCTATTAGTCTAAGTACTGCTGCTGTACTTGTACATTCAGCTGGTTCTGTAGACTTAGGTGCATTAGCCGTATCTAGGGAAGAATACGTAACCCTACCTGGTTCATTTGATTCTGGTTCTACGCTTAATGTTAAAAATGAATTACTTACGTATACTGATGGTAAGTATCGTTGGGACGGTGCATTACCTAAAATTGTTCCTGCTGACTCAACCCCTACAACAACCGGTGGAGTTGGTGATGGTGCTTGGGTTAGCGTTGGTGATGCTGCATTGAGGAGTGATTTATCATCATCTTCTTCTGGTCGTGGGGCATCACTTGTTAATTTAACAAGCGGAAATTCAGTACAAGAAGAAATTGATTTTCTTGCTTATGCCTATGGGGTAAGGCTAAGTAATTACATGGCAGACCCAGACCCACTGACTGCTGCGCTTGCCGACTCAAGAAATAAAAAACTGCCATTAATCATTGACTGTGATGCAACGTACAAAACATTTCTTGTTTATAGTAACGACAGGATAATCGGTTGTGGCGACCACACCTTAACAAAAATTGGGAACGACAAGCCATCAATACCATCAGCACAGCAACCAGAACGTCCATCTGGAACAACGACAGATTTTAGTTCAATAGATGCAGGTATTGTTATCGTTCACCCTGACAATGGATCTGCTACTAATATCATTATTTCAGGGTTCAATCTTGCAAATACTTCTCATTGTGATTATGCAATCCACTGTACTTTCATGTCTTTTACAAAAATAGAAGACATGAAGTTTAACGGGTACAAGCGTGGGATTAAATGGTACAACGCCTATGGAAACCAACTATCAAGAATATTTTCACTTTACTATTATTCTACCTCTGATGTTTTTTCTGACTTCATTTGCTACGACTTTTCTGACGGGAACTATTCATCAGGAACATCAAATACAATAACTAACGTAACATGCACTAACTATAAGAAATGTTATTACGTGGCAAATCTAAACTACTCTACATTCACCAATTGTGGTGGTGAAGGAGTCGAGTCACCAACACCAGTATCCACAGGAAACATTCCACAGACCTTCGAGTTTGTTAATTGCCCCAATATTGTCCTGAATACCCCCTATACTGAGAATTTAAGGGGCGGGTTTATAAGGGCGGTTAGTGATGCATCTGGGGTGTATCAGGGGGCCTCAACTATAGTCATCAATGGGCCTGAGGCGGTTGTGGGTATCACAGGCACCACTACTAATGTCGGCGCTAAGCTTCTAGACATTCAGGGGGGAGTTAACTGTGTAGTCAATGGTGGGTACATGACCGGGGCCGCAAGCGGTTACTTCTTAGAGTTTGGGGGGGCTGATGGTGATGCCACCCTCCTGATAAACGGTATGGAGATGCGTAATGTGTTAGAGCAGATACGTAGCCACTTTGGTTATAACGGAATTAACTCAATAAAAGGTTTGCGCCCAATGCAGTTACTCCGCAAAGGGATTGGAGATGCTACTGGTACTGGGATAGTAAACTGGAAAACAGCTTCCGAAGACCAGTATTTTATGGGTGGCGGTAATTTCACCAAGACGGCTCTCGGTGGATACTATCAAGTTGATGTTGAGGTACCAATTGGAACAAATGCCACTGGTGGGGAGGTAACTCTTTTACTCTCAGATACCGATACGGATTCCGGAGTTGCTATAGCTCAATGTTATGTTCCAGCGGTATCTACCGGTAGGTATTCAGCAAGATTGCGGTACGAAGGTAGATTGCCGGGTGGAAAGTTCCTTTATGTAAAAACAACTGTAGGTTGGTCTTCTGTTTATGATACCGATGCGGTATTTAATGTAATTCTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2bb4cdffc780eb1381be36d385723321d1c613e45850129463ab508d94472534
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7564
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50