Protein

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Genbank accession
YP_009613622.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,77
Protein sequence
MTIRLYGILTDGLNKPIVNATVSLIARSNTLIVLGSSEAIFRTDSQGAYNITMNPGHYVVIVGPQGKEPYKAGEIVLYADSPDGSLNGYLVNWVEEELTPDVIKQVQQLVAASEEYSLQAGRSAAAANADATDARNSKASAAQSASDALVYKNDAKASEDAAKQAQAGAAGSANTASQAVTTIQGLKSDVEQLKAETTTLKDAAAASAAQASNSATEAGQQASNAAGSAQSASTDAGRAEVAAGKAEGIIGKSLLKENNLSDLSDINIARQNLRLHAFDSVGGHTFIYSPDGNYRIVLRNGDGLFIVQTSDGATTKPILIGAGGTGADNITDAKKNLEIASFKSTDEQSLIYSPDISKYAIFIKDNGDWGCLTMSDGERHPLAINAGGTGATTPDGVRHILGLATNHIPVFLGVYLDDNNGQSFRHSLP
Physico‐chemical
properties
protein length:429 AA
molecular weight: 44560,75130 Da
isoelectric point:4,94990
aromaticity:0,05361
hydropathy:-0,21632

Domains

Domains [InterPro]
IPR013609
ATT
1–134
IPR013609 Coil DC_1205
DC_1669
ATT
3–204
DC_1669
G3DSA:2.60.40.1120
STR
5–92
G3DSA:2.60.40.1120 DC_1675
IPR008969
ATT
5–73
IPR008969
YP_009613622.1
1 429
Architecture
ATT
STR
ATT 1-204 | STR 205-424 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009613622.1
1 429
Domain Start End Length (AA) Confidence
N-terminal 1 405 405 0,8558
Central domain 406 418 14 0,6914
C-terminal 419 429 10 0,5485
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-405
Central
406-418
C-terminal
419-429

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SE1 (in:Nonagvirus)
[NCBI] 		2115848 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009613622.1 [NCBI]
Genbank nucleotide accession
NC_042025.1 [NCBI]
CDS location
range 58358 -> 59647
strand -
CDS
ATGACAATTCGTCTATATGGTATCCTAACAGATGGTTTGAATAAACCTATTGTTAATGCAACCGTATCCTTGATAGCAAGAAGTAACACACTCATAGTGTTAGGTAGTAGCGAAGCAATATTCCGTACAGATTCTCAAGGTGCATATAATATCACAATGAACCCAGGACACTATGTGGTTATAGTGGGTCCTCAAGGAAAAGAACCATATAAGGCTGGAGAAATTGTCCTATATGCAGATAGTCCGGATGGGTCACTTAATGGTTATCTTGTTAATTGGGTGGAAGAAGAACTAACACCAGATGTTATCAAACAAGTTCAACAACTTGTGGCTGCTTCTGAAGAATACTCTTTGCAAGCTGGCCGCTCTGCTGCGGCAGCAAACGCAGATGCTACGGACGCTCGTAATAGTAAGGCTTCAGCTGCTCAATCTGCTTCAGATGCACTTGTCTATAAAAATGATGCTAAAGCTAGTGAAGACGCTGCTAAACAAGCACAGGCTGGCGCTGCTGGTTCCGCTAATACTGCATCACAAGCTGTGACCACAATTCAAGGTCTAAAATCTGACGTTGAGCAGTTAAAAGCGGAGACTACCACACTAAAAGACGCTGCCGCTGCTTCAGCTGCACAAGCAAGCAATAGTGCTACCGAAGCAGGACAACAAGCTAGCAATGCTGCTGGTAGCGCACAAAGCGCATCTACAGACGCTGGGCGCGCGGAAGTAGCTGCTGGCAAAGCTGAAGGCATTATTGGTAAATCGTTACTAAAAGAAAATAATCTTTCCGATTTATCCGACATAAACATTGCAAGACAAAACCTCCGCTTACATGCGTTTGATAGTGTTGGCGGTCATACTTTTATTTACTCACCAGACGGGAATTATAGAATTGTCTTAAGAAACGGAGACGGTCTATTTATTGTTCAGACCTCAGATGGTGCAACAACAAAACCAATTCTCATTGGTGCAGGTGGTACTGGCGCCGATAATATAACTGACGCTAAGAAAAATCTGGAGATTGCATCATTCAAAAGTACAGACGAACAAAGTTTAATATACTCCCCTGATATTTCCAAATATGCAATTTTTATAAAGGATAACGGCGATTGGGGATGTCTTACAATGTCTGACGGAGAAAGACATCCTTTAGCTATCAACGCTGGCGGTACAGGTGCAACAACTCCAGATGGAGTAAGGCACATTTTAGGGCTTGCGACAAATCATATTCCTGTGTTCTTGGGTGTATATCTTGATGACAACAACGGCCAATCATTCCGGCATTCTTTACCTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
899e82d558fb6bd3830d29991c95f518b9ea8c916612ec485e6c5a3b893b6ce1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8117
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Lytic Bacteriophage SE1 Infecting Salmonella Enteritidis Isolates Kim,D., Kim,Y.J., Han,B.K. and Kim,H. 2012-09-15 — GenBank