Protein

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Genbank accession
YP_009798557.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MARTTITQFPAGSSQYRIEFDYLARPFVVVTLVNSSNMTQNKVLDVGSDYRFMSATVIEILIDQTGFDIVRIQRQTDTDLVVSFRDGSVLTANDLTNAELQAIHIAEEGREQTLITAAEFVLAAQRYSEASASSAAEARAARDRVELLMSSGLYGYVLVTSFQTGATLTLPNQALKDESTGEYFRWDGSLPKSVPAGSTPSSSGGVGPGAWVSVGDASLRGNLKSEDSDKGDSLYTVKQPYVGSIGLTGKANNALFINVKQFGAVGSGSYHPLSERYGTLAEAQAHYPFVTSLAESIDYAAWQAALNTGKVVYGTDNAYVITQTLLPVSGGGIIGLGVNKWVSGFTATFNPDLETGTTFLMYGSGPKNYTLDCVSNMDVSGGVVANPSASDPYTATSPAPSYDLLDFTNGDASGTTRATLKPFSVAILMPETGCVRLENFRIVPYFNGLDGYKSLTNTGLGDNWDVGIWSRASFGNEYRNLQVVGYWRMTALLKTNVPLSGTIAAQGEDENYYHCRFQGYKGVSIRAHDVFRITAVTDTTIEIPWSASHTFNATGTLRARGHNFVYTSLSVSGDKLIFNGVSNASLATVGSTIRRNDIDNFGIAGTQFFDCYITSLYHHTRLMSTSQYLDQPFSRPSECMEVSGEPVRGVQVHGSTIQGWDDVLLHLHDCGNMNFYSTYFESQPPYETIGGGNASFGYGARMLASRQSTSSLPYAAGNTRVLRMIGCTEGNGVDWGPEYTTYTGGRYTTTGGVFNPRESYIDHKAFPEQADSEVRLVSEKGNVRVSPYTGGFVYVGPASGDANLQSASGSLNLLSGLRVRFGTPSAYWALIDSAKFAPTTDNVLAIGQPSKRVSVVYAGTGTINTSDERLKVRDGITSEERAAALEIKANIWKYRFSDSLERKKDGARLHFGVGAQTVGEILRKHGLDPDCYAFWCYDEWPDSTDEDGAFTPAGNRYGIRYDELLCFLMAAI
Physico‐chemical
properties
protein length:972 AA
molecular weight: 105334,06410 Da
isoelectric point:5,24370
aromaticity:0,10700
hydropathy:-0,21245

Domains

Domains [InterPro]
DC_0369
STR
1–918
DC_0369
IPR005604
ATT
13–114
IPR005604 G3DSA:2.10.10.80 IPR012334 IPR044914 IPR036388
IPR040775
RBD
160–216
IPR040775 cd10144
IPR030392
CHP
866–927
IPR030392
IPR030392
CHP
866–972
IPR030392
YP_009798557.1
1 972
Architecture
STR
ATT
STR
ATT
STR
RBD
STR 1-12 | ATT 13-114 | STR 115-155 | ATT 156-214 | STR 215-918 | RBD 919-972
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009798557.1
1 972
Domain Start End Length (AA) Confidence
N-terminal 1 295 295 0,9970
Central domain 296 761 467 0,9840
C-terminal 762 972 210 0,9102
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-295
Central
296-761
C-terminal
762-972

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage YZ1
[NCBI] 		2079534 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009798557.1 [NCBI]
Genbank nucleotide accession
NC_047927 [NCBI]
CDS location
range 32085 -> 35003
strand +
CDS
ATGGCTAGAACAACTATCACTCAGTTCCCCGCTGGAAGCTCTCAGTACCGAATTGAGTTCGACTATCTGGCACGACCTTTCGTCGTTGTTACGTTGGTTAACAGTTCAAACATGACTCAGAACAAGGTCTTAGACGTAGGTAGTGACTATCGGTTCATGAGCGCAACGGTCATTGAGATTCTTATCGACCAGACGGGATTTGATATCGTGCGCATCCAGCGTCAGACTGACACAGACTTGGTGGTATCCTTCCGCGATGGTTCGGTTCTGACCGCTAACGACCTGACTAACGCTGAACTTCAAGCCATTCATATAGCTGAAGAGGGCCGAGAACAGACACTCATAACGGCGGCTGAGTTTGTATTGGCTGCACAGCGTTATTCTGAGGCTTCAGCAAGTTCAGCAGCAGAAGCAAGGGCCGCAAGGGACAGGGTGGAGCTATTAATGTCTTCTGGCCTATACGGATATGTACTGGTAACATCTTTCCAGACAGGAGCAACACTTACTCTTCCTAACCAAGCACTTAAGGACGAGTCGACTGGCGAATACTTCAGGTGGGACGGTTCTCTTCCTAAGTCTGTTCCAGCAGGCTCCACCCCTAGCTCTTCCGGTGGTGTCGGACCTGGGGCGTGGGTTAGCGTAGGTGATGCATCGTTACGCGGCAACCTTAAGAGCGAGGACAGCGACAAGGGTGATTCCCTGTATACCGTGAAGCAGCCGTACGTAGGCTCTATCGGTCTTACCGGAAAGGCTAACAACGCACTGTTCATTAACGTGAAGCAGTTTGGTGCTGTAGGCTCTGGCAGCTATCACCCTCTGTCTGAACGGTATGGAACCCTTGCTGAGGCTCAGGCTCATTACCCATTTGTCACAAGTCTTGCTGAGTCTATAGACTATGCTGCGTGGCAGGCGGCTCTCAACACTGGTAAGGTTGTGTATGGGACCGATAACGCCTACGTGATTACCCAGACCCTGCTGCCAGTATCTGGTGGTGGGATTATTGGACTCGGCGTCAACAAGTGGGTGTCTGGTTTCACAGCGACCTTTAACCCTGACCTTGAGACCGGTACTACATTCCTCATGTATGGCTCTGGTCCGAAGAACTACACGCTTGACTGCGTGTCAAACATGGACGTGTCAGGAGGGGTAGTTGCAAACCCATCGGCCTCGGACCCTTATACAGCCACCTCTCCAGCCCCATCGTATGACCTTCTGGACTTCACCAACGGCGATGCCAGTGGTACTACACGAGCTACCTTGAAGCCCTTCTCAGTGGCAATCCTAATGCCTGAGACTGGTTGTGTGCGCTTGGAGAACTTCCGCATCGTACCATACTTCAACGGACTTGATGGGTACAAGAGCCTAACTAATACTGGTCTTGGAGATAACTGGGACGTAGGCATCTGGTCAAGGGCATCGTTTGGCAACGAGTATCGAAACCTACAGGTTGTAGGCTACTGGCGTATGACCGCGCTGCTGAAGACAAACGTTCCACTGTCTGGCACTATCGCGGCTCAAGGCGAGGATGAGAACTACTACCACTGCCGCTTCCAAGGATATAAAGGCGTTTCAATACGTGCGCACGACGTGTTCAGGATAACGGCTGTTACTGACACTACGATAGAAATACCGTGGTCAGCCAGTCATACATTCAACGCAACTGGCACTCTGCGAGCTAGAGGTCATAACTTCGTGTACACGTCTCTGTCAGTATCTGGCGACAAGCTCATCTTTAACGGTGTGTCTAACGCTTCGTTGGCGACCGTTGGTTCGACCATACGTCGCAACGATATTGACAACTTCGGCATAGCGGGTACTCAGTTCTTTGACTGCTACATTACCAGCCTTTACCATCACACCAGACTAATGTCCACCTCCCAATATCTCGACCAGCCTTTCAGTAGGCCGTCTGAGTGCATGGAGGTTTCTGGTGAGCCTGTTAGGGGTGTACAGGTTCATGGCAGTACAATACAGGGGTGGGACGACGTTCTTCTTCACCTGCATGATTGTGGGAACATGAACTTTTATAGCACCTACTTTGAGAGTCAGCCCCCTTACGAGACAATTGGTGGCGGTAATGCCTCATTTGGCTATGGTGCTCGCATGCTTGCTTCAAGACAATCAACAAGTTCCCTACCTTATGCTGCCGGGAATACTCGCGTATTGCGGATGATTGGCTGCACCGAGGGGAACGGGGTTGATTGGGGTCCAGAATATACAACTTACACAGGCGGTCGATACACAACTACTGGCGGTGTATTCAATCCCAGAGAGAGCTATATAGACCATAAAGCGTTCCCTGAGCAGGCCGATAGTGAAGTGCGTCTGGTATCGGAGAAAGGGAACGTTAGGGTGTCACCTTATACCGGAGGTTTTGTGTATGTTGGTCCTGCTTCAGGGGATGCCAACTTACAGTCAGCCTCAGGGTCTTTGAACCTGCTGTCTGGTCTTAGGGTACGATTTGGTACACCTTCGGCATACTGGGCCTTGATTGATTCCGCTAAGTTTGCCCCTACAACAGACAACGTGTTGGCTATTGGTCAGCCGTCTAAAAGGGTGTCAGTAGTCTATGCTGGTACAGGTACAATCAATACTTCAGATGAAAGACTTAAGGTTCGCGATGGGATAACTAGCGAGGAGCGGGCCGCTGCTTTAGAGATTAAGGCTAACATCTGGAAGTACCGCTTCTCGGACTCGCTAGAGCGGAAGAAGGATGGTGCCAGACTCCACTTCGGTGTTGGGGCGCAGACTGTAGGTGAAATATTGCGCAAGCATGGACTGGACCCTGATTGCTACGCCTTCTGGTGCTACGATGAGTGGCCCGACAGTACCGATGAGGATGGGGCGTTTACTCCGGCTGGGAACCGTTATGGCATCAGGTATGACGAGCTGCTGTGCTTCTTGATGGCAGCGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c384f6e0d2df5fd7b8a73994754c70c47c7045e029836e6b1348f4fc32103ffa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6652
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A bacteriophage from an environmental multidrug resistant E. coli and its function in ARGs horizontal transfer Yang,Q. 2018-10 — GenBank