Protein

View in Explore
Genbank accession
YP_007674509.1 [GenBank]
Protein name
tail sheath
RBP type
TSP
Evidence DepoScope
Probability 0,61
Protein sequence
MRGKNKMPLNLASPGIVVREVDLTVGRVDPTSGGIGAIVAPFAQGPVDLPTVIGSEKDLLDVFGKPYGTDKHYEHWLVASSYLAYGGSLSVVRADDTGLQNGFVGTAASIKIKSLEHYEELGYDENPITNVVVAARNPGSWANGLRVGIIDSKADQILTLSAAPAGFAVGMGVTQAISSTLPGAGTTSVLDGYLKGIVTQVAGVDAYVKVLEHVSAAGTVTEVDYQPSGVYAFSGSGSVAIHTSGQAASYATTSLTAQADWFDQQSLTLTSSSTVKWNQLADRPGTSEYAAARGSRFDEVHVVVVDGDGDITGNSGTVLEKHLSLSKAKDAEFSLGSPSYWRKYIANGSPNIFAGSAPAGIVTTGFVSGGTGFDPETDVSWDQNAEGITFAATGNSNNTLGGGWNYDGAGNIENDGALSSGLDGLVTGYGLFENTEKYNVDFILMGSAGYGKEEAQALANKCIAVAETRKDAVAFISPYRGAAITDTSDDRAVNINSDETITENVISFYSPITSTTYGIFDSGYKYMFDRFANTFRYVPLNGDIAGLCARNDANNFPWFSPAGTNRGGILNAVKLAYTPSKAQRDRLYSNRVNPVIFSPGAGIVLFGDKTGFGKSSAFDRINVRRLFIYLEDAISAAARDQLFEFNDEITRTNFVNIVEPFLRDVQAKRGIFDFVVICDETNNTAAIIDNNEFVADIFIKPARSINFIGLTFVATRTGVSFDEVIGNV
Physico‐chemical
properties
protein length:728 AA
molecular weight: 77291,05640 Da
isoelectric point:4,74989
aromaticity:0,10027
hydropathy:-0,05934

Domains

Domains [InterPro]
IPR052042
Unmapped
7–712
IPR052042
G3DSA:3.40.50.11780
STR
31–188
G3DSA:3.40.50.11780 G3DSA:3.40.50.11780 IPR020287
DC_1098
STR
137–377
DC_1098 G3DSA:3.40.50.11780
IPR035089
TAS
435–610
IPR035089
YP_007674509.1
1 728
Architecture
STR
STR
TAS
TAS
STR 31-377 | STR 384-580 | TAS 581-610 | TAS 614-714 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007674509.1
1 728
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,7714
Central domain 143 341 200 0,5254
C-terminal 342 728 386 0,2789
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-341
C-terminal
342-728

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SKS1
[NCBI] 		754042 Uroviricota > Caudoviricetes > Llyrvirus >
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007674509.1 [NCBI]
Genbank nucleotide accession
NC_020851 [NCBI]
CDS location
range 107827 -> 110013
strand -
CDS
ATGCGAGGAAAAAACAAGATGCCACTAAATTTAGCATCTCCTGGTATTGTAGTAAGAGAAGTAGACTTAACTGTCGGTAGGGTTGATCCAACCTCCGGTGGCATCGGTGCGATTGTCGCACCTTTTGCACAAGGTCCTGTCGATCTTCCTACAGTAATCGGAAGCGAGAAAGACTTATTAGATGTCTTCGGAAAACCATACGGTACAGATAAGCACTATGAGCACTGGTTAGTTGCTTCTTCTTATCTGGCATATGGTGGTTCACTTAGTGTTGTAAGAGCAGATGATACTGGTCTTCAGAACGGGTTTGTTGGTACTGCCGCAAGCATCAAAATAAAAAGTCTTGAGCACTACGAAGAACTAGGATATGATGAAAATCCTATTACTAATGTAGTTGTTGCCGCCAGAAATCCCGGTTCTTGGGCAAATGGTTTAAGAGTTGGTATTATTGATTCCAAGGCAGATCAAATTCTTACACTTTCTGCAGCACCTGCAGGATTTGCTGTTGGAATGGGAGTTACTCAAGCAATTTCTTCAACACTTCCAGGAGCAGGAACTACTTCAGTTCTTGATGGATATTTAAAAGGTATCGTCACTCAGGTTGCTGGTGTAGATGCTTATGTAAAAGTTCTTGAGCATGTCTCTGCAGCAGGAACTGTAACTGAAGTTGATTACCAACCATCCGGTGTTTATGCATTCTCTGGAAGTGGAAGTGTAGCAATTCATACTAGTGGACAAGCAGCATCATACGCGACTACTTCTCTTACTGCACAGGCAGATTGGTTCGATCAACAATCACTTACTTTAACTTCTTCATCGACTGTTAAGTGGAATCAACTTGCAGATCGTCCAGGAACTTCCGAGTATGCAGCAGCAAGAGGTTCTAGATTTGATGAAGTTCATGTTGTCGTAGTTGATGGTGATGGAGATATCACTGGAAACTCTGGAACAGTTCTTGAGAAGCATCTATCACTATCAAAAGCAAAAGATGCTGAATTCTCTCTCGGATCTCCTTCATACTGGAGAAAGTATATTGCAAATGGTTCACCTAACATTTTTGCAGGTTCGGCACCAGCAGGTATTGTAACAACTGGATTTGTTAGTGGTGGAACTGGATTCGATCCTGAGACTGATGTATCTTGGGATCAAAATGCTGAAGGTATTACCTTTGCTGCAACTGGTAATTCTAACAACACATTAGGTGGTGGTTGGAATTATGATGGAGCAGGCAACATAGAAAATGATGGTGCATTAAGTTCTGGTTTAGATGGATTGGTTACTGGTTACGGATTGTTTGAGAATACTGAAAAGTATAATGTAGATTTCATTCTTATGGGATCTGCCGGATATGGTAAAGAAGAAGCACAGGCACTTGCGAATAAGTGTATTGCAGTTGCTGAAACAAGAAAGGATGCAGTTGCATTCATCTCACCATATAGAGGTGCTGCAATTACTGATACTAGTGATGATAGGGCAGTAAACATCAATTCAGATGAGACAATTACTGAAAATGTAATTAGTTTCTATTCTCCCATCACTTCAACAACTTATGGAATCTTTGATAGTGGTTACAAGTATATGTTTGATAGGTTTGCAAATACCTTCAGATATGTTCCACTAAACGGAGACATTGCCGGACTTTGTGCCAGAAATGATGCAAACAACTTCCCATGGTTCTCACCAGCAGGAACAAATCGTGGTGGAATTCTAAATGCAGTTAAACTTGCATATACTCCATCTAAAGCACAGAGAGATAGATTGTATTCGAATAGAGTCAATCCAGTAATCTTCTCACCTGGTGCCGGTATTGTTCTCTTTGGGGATAAGACTGGATTTGGTAAGTCGTCGGCATTTGATCGTATTAACGTTCGTAGATTGTTTATCTATCTTGAGGACGCAATCTCTGCTGCGGCAAGAGATCAACTCTTTGAGTTTAATGATGAAATCACAAGAACTAACTTTGTGAACATTGTCGAACCATTCCTTCGTGATGTCCAGGCAAAGAGAGGAATCTTTGACTTTGTAGTTATTTGTGATGAGACAAATAACACTGCTGCTATTATAGATAATAATGAGTTTGTAGCAGACATCTTTATCAAACCCGCAAGATCAATCAACTTCATCGGTCTTACGTTTGTTGCCACCAGAACTGGTGTTTCATTTGATGAAGTAATCGGTAACGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0537607c95b06b699f4fd5b8d98a14c80e20a78d97bd9a48ccfe820964439633
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6544
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-SKS1 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank