Protein

View in Explore
Genbank accession
BAS04857.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MYTFVRALAVAPGTNQRWAEVDISATPTSTLLTKYRQVYVVLTDGITDTELTLNLDDVAAAIQTNAGTISDYLTAIGNKTLPTTVGSPVIVRNNAIFSDLWEAGFWADSIDYNVGAGVDLPQELRPHVVVKPDNPADQVGYDYLGFRQKVLANVNGFYHNTAADSKGFYIVDGNKSRLKSGSNQLGLLSFGTFGTFDIVPITQDMLAFDLNTDTGLVDKVHVKFADTDLTTKTPILILGGYMLLPGGNQCLLTNTNIFTFKTFKYPFLEKYFESEPYLDFDDFNIQHQTDNPNWVIAQNFKSQDFLTKYFTMSQSFMVLLDANTIVVEKTYPEKQTVPHTFMSWEEPKWPLVTGEGKHEVYWKQYEAGGWMLRCHDTFKRNYLFNTVGYADRVAVDNQMWMGKAGTLGDAMFLKLIEEEIQIQVS
Physico‐chemical
properties
protein length:425 AA
molecular weight: 47824,55170 Da
isoelectric point:4,83753
aromaticity:0,12706
hydropathy:-0,16965

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BAS04857.1
1 425
Domain Start End Length (AA) Confidence
N-terminal 1 233 233 0,1220
Central domain 234 414 182 0,1600
C-terminal 415 425 10 0,9904
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-233
Central
234-414
C-terminal
415-425

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSF1
[NCBI] 		1689679 Uroviricota > Caudoviricetes > Chimalliviridae > Chiangmaivirus RSF1 >
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAS04857.1 [NCBI]
Genbank nucleotide accession
AP014927 [NCBI]
CDS location
range 67693 -> 68970
strand -
CDS
ATGTACACATTCGTTCGAGCACTCGCCGTTGCACCCGGCACCAACCAACGCTGGGCAGAAGTCGACATTTCGGCGACTCCTACCAGTACCCTCCTGACCAAATACCGACAGGTTTATGTTGTCCTGACGGACGGAATCACCGACACTGAACTGACACTTAACCTGGACGATGTTGCAGCAGCGATCCAGACCAATGCGGGTACGATTTCAGACTATCTGACCGCGATCGGCAATAAAACTTTACCGACTACCGTAGGTAGTCCGGTGATCGTGCGAAACAACGCTATTTTCAGCGATTTGTGGGAAGCTGGTTTCTGGGCAGACTCCATCGACTACAATGTCGGTGCTGGTGTCGACTTGCCTCAGGAACTCCGTCCGCACGTCGTGGTGAAGCCTGACAATCCCGCAGATCAGGTCGGTTACGACTATCTGGGTTTCCGTCAGAAAGTGTTAGCCAACGTCAATGGCTTTTACCACAACACTGCTGCAGATTCGAAAGGCTTCTATATCGTCGACGGCAACAAGTCGCGTCTGAAATCTGGCAGCAACCAGCTGGGTCTGCTTTCGTTCGGTACGTTCGGTACGTTTGACATCGTGCCGATTACGCAAGACATGCTGGCATTCGACCTGAATACGGACACGGGTCTCGTCGACAAAGTCCATGTCAAGTTCGCCGATACCGATCTGACGACCAAGACACCGATTCTGATTCTGGGTGGCTACATGTTGCTGCCTGGCGGCAATCAGTGTCTGCTCACCAACACGAACATCTTCACGTTCAAGACGTTCAAGTATCCGTTCCTGGAGAAGTACTTCGAGTCCGAGCCGTATCTGGACTTCGACGATTTCAATATCCAGCATCAGACGGATAACCCGAACTGGGTGATCGCTCAGAACTTCAAGAGTCAGGATTTCCTGACCAAGTACTTCACCATGAGTCAATCGTTCATGGTGTTGCTCGATGCGAACACCATCGTGGTCGAGAAGACCTATCCGGAAAAGCAAACGGTTCCTCACACTTTCATGTCGTGGGAAGAACCCAAGTGGCCTCTGGTTACGGGTGAAGGCAAACACGAAGTCTACTGGAAGCAATACGAAGCCGGTGGCTGGATGCTGCGTTGCCACGACACCTTCAAACGGAATTATCTGTTCAATACGGTTGGTTATGCTGACCGTGTGGCAGTCGACAACCAGATGTGGATGGGTAAAGCGGGAACGTTGGGTGACGCCATGTTCCTGAAACTCATCGAAGAAGAAATCCAGATCCAGGTATCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8aa70b259a89b86d59ea43b13c208d2a9c888fb9cfc5090cb8b6c57adc743bb3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2736
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Two Asian jumbo phage RSL2 and RSF1 infecting the phytopathogen Ralstonia solanacearum share common features related to the phi-KZ-like phages Kawasaki,T., Fujie,M., Chatchawankanphanich,O., Ogata,H. and Yamada,T. 2016-07 — GenBank