Protein

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Genbank accession
YP_008857263.1 [GenBank]
Protein name
colanic acid degradation
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADLLPTVKISDLPTATDSFEGDFLVVDQSDATRKSTWSSLFSRFGVMRMFSFQDGGTLTSAKDQVIDRTTNKVYQWTGSYPKLVPANSTPESTGGVGAGGWSVNDPSLRGDLAGINGSTYVGGPAGTVAQSLDGFITPSQFVGKYPTTTEAVTAMVAYAKANKKAVLAWGWELTLETSVYIDGVEWYGGAFNQSGGNRYMYLSNSTFRWTTFTGVCTRHYGGRLIITDSAWVNNTNTAAMLIQALPIDGTIDILDSDFRGCKYGILQQGTGALITRARFARLNFNDLTGDAIECNVVNRHYKAGGLTIEDINIDNINNTDNSPNWGIGIGVAGQGPYGANASDDQYVSGIIIRNVKARRVRQCIHFELCRDFKVENVEVYPDASVSNGTLLASGGVVCYGCKDYIVDGVRGEMVNGATRFIYFGWGVNAGAYAAPCRDFTLRNVRTHTGLVDIPVSARDDWTNTVTVEDVECDTFKYRGLVSRLRLADIRCNKFDGIGDYEAGQGEAGGAMKRWAWCSAEILNINSLDANGVANGSFGQVGFDHVTTYGCNFDVVQHSKTNGNRGVTLLNAGNIYIADNDLFPQGKEFVKGDIILKKTGGLFVVETGGSYIEPNDFIRATTVGSKTIQCAADSGVSQPWATRAFKSAGLQLTIPGAGAGGADLKTTVIRAPYQNGAWTTPFYLDIADPIQTATPDNTALVSTNPVVYSERT
Physico‐chemical
properties
protein length:712 AA
molecular weight: 76633,80390 Da
isoelectric point:5,24274
aromaticity:0,10112
hydropathy:-0,16404

Domains

Domains [InterPro]
DC_0018
ATT
6–218
DC_0018 IPR023882
G3DSA:2.10.10.80
ATT
47–115
G3DSA:2.10.10.80 DC_0045
IPR040775
RBD
51–103
IPR040775
YP_008857263.1
1 712
Architecture
ATT
RBD
ATT 6-218 | RBD 250-712
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008857263.1
1 712
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,9906
Central domain 148 582 436 0,9943
C-terminal 583 712 129 0,9532
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-582
C-terminal
583-712

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage 4MG
[NCBI] 		1391428 Uroviricota > Caudoviricetes > Vequintavirinae > Seunavirus 4MG >
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008857263.1 [NCBI]
Genbank nucleotide accession
NC_022968 [NCBI]
CDS location
range 30193 -> 32331
strand -
CDS
ATGGCAGATCTATTACCTACCGTCAAAATTTCGGACCTTCCGACCGCGACGGATTCTTTCGAGGGTGATTTCTTGGTTGTTGACCAGTCGGATGCTACACGCAAATCCACTTGGTCCAGCCTGTTCTCTCGTTTCGGTGTCATGCGTATGTTCTCATTCCAGGATGGTGGTACGCTGACCTCCGCTAAGGACCAGGTAATTGACCGCACAACTAACAAGGTGTACCAGTGGACGGGTTCTTATCCTAAGCTGGTTCCTGCCAACTCAACCCCGGAGAGCACCGGGGGTGTTGGTGCAGGGGGATGGTCTGTTAATGACCCTTCTCTCCGTGGAGACCTTGCTGGGATTAATGGGTCAACTTACGTAGGTGGTCCTGCTGGGACGGTTGCACAATCCCTCGATGGATTTATTACACCATCACAGTTTGTTGGTAAATACCCAACAACAACCGAAGCAGTGACCGCGATGGTGGCTTATGCAAAAGCGAATAAAAAAGCTGTGCTGGCATGGGGCTGGGAACTGACTCTAGAAACAAGTGTTTACATCGACGGCGTAGAGTGGTATGGTGGTGCATTCAACCAATCAGGTGGCAACCGCTACATGTACCTGTCAAACAGTACATTCCGTTGGACTACCTTTACCGGGGTTTGTACTCGACACTACGGTGGACGGCTAATCATAACTGATTCTGCGTGGGTAAATAACACCAATACAGCAGCCATGCTGATCCAAGCTCTACCTATTGATGGTACAATCGACATCCTTGATAGTGATTTCCGTGGTTGTAAGTACGGTATCCTGCAACAAGGTACTGGTGCTCTGATCACCCGTGCTCGTTTTGCTCGACTGAACTTCAATGATTTGACAGGCGATGCGATTGAGTGTAACGTTGTTAACCGACACTACAAAGCAGGTGGTTTGACCATCGAAGATATCAACATTGACAACATCAACAACACAGACAACTCTCCTAACTGGGGTATCGGTATCGGTGTTGCGGGTCAGGGTCCATACGGTGCTAACGCTTCCGATGACCAGTACGTCAGTGGGATCATCATTCGTAACGTCAAGGCGCGACGTGTACGTCAGTGTATCCACTTCGAACTTTGCCGAGATTTCAAGGTAGAGAACGTAGAGGTCTACCCTGACGCTTCCGTTTCTAACGGCACACTTCTGGCATCTGGTGGTGTTGTTTGCTACGGGTGTAAGGACTATATCGTTGATGGTGTTCGTGGTGAAATGGTCAACGGGGCTACTCGTTTCATCTATTTCGGCTGGGGTGTGAACGCAGGGGCATATGCTGCTCCATGTCGTGACTTTACGTTGAGAAACGTCAGAACTCACACTGGACTGGTGGACATTCCTGTAAGCGCCAGAGATGATTGGACAAACACTGTGACGGTTGAAGATGTTGAATGCGACACCTTCAAATACCGTGGCCTTGTTTCCCGTCTTCGTCTTGCAGATATCCGTTGTAACAAGTTTGACGGTATCGGTGACTACGAAGCGGGGCAGGGTGAAGCAGGCGGGGCTATGAAACGCTGGGCTTGGTGTTCTGCTGAGATTCTGAATATCAACAGCCTCGATGCAAACGGTGTTGCCAACGGTAGTTTTGGACAGGTAGGGTTTGATCATGTTACGACTTACGGTTGTAACTTTGATGTGGTTCAACACTCCAAGACAAATGGTAACCGTGGTGTAACTCTTCTCAACGCCGGGAACATCTACATCGCTGATAACGATCTTTTCCCACAAGGTAAAGAGTTTGTTAAAGGTGACATCATCTTGAAAAAGACTGGTGGGCTATTTGTGGTCGAGACTGGTGGGTCTTACATTGAACCTAATGACTTTATCCGTGCAACCACGGTTGGTTCAAAAACGATTCAGTGTGCAGCCGATTCTGGAGTAAGTCAACCTTGGGCGACTCGTGCGTTTAAATCCGCAGGTCTCCAACTGACAATCCCAGGAGCAGGTGCTGGAGGCGCTGACCTGAAGACAACGGTCATCCGCGCTCCGTACCAAAACGGTGCCTGGACAACACCATTCTATCTCGATATTGCTGATCCTATCCAGACAGCAACACCAGATAACACGGCGCTTGTTTCCACAAACCCGGTAGTATACAGCGAAAGGACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e54e18c5fcfb32a8d829b3f6aa68a23a8cd41ff6d3b114e03404b1cfa17d3f94
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7264
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50