Protein

View in Explore

Genbank accession

YP_009207973.2 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

Evidence RBPdetect

Probability 0,75

Evidence RBPdetect2

Probability 0,96

Protein sequence

MVGKTILELDLLTGQIDAANSYIEVHVVGQAASVKVPLGGVTVNGKSAYEVAVAAGYVGTQAQWLASLQGANGKSAYQSAVDQGYVGSEANWVASLKGPKGDQGIQGNQGPQGQKGDTGATGNSAYQDAVAQGFVGDLPTWLASIKGAKGDKGDAGTNGTNGADGKSAYEVAVADGFVGDEPTWLLSLHGKSAYEDAVNQGYVGDLNSWLTSLKGPKGDQGAVGPAGQSSVLGHLVGSVATSADLPDPSGFLQSDYFFVGTHVFMNLNGEWVDMGNFQGLPGKDGSGITVLGSLPSTAYLPTSGQRSGDSWLIGKSMWVWQGTIWQEQGNEGLQGPVGPTGATGAQGPSAWDVIRAQHPEVNTLDLFVQYITGPQGVKGDTAISFVADGTVAAAADLPATGTNNHGYLVGDNTNGYDFYVWVNSQFVNLGRNVGPKGDTGAPGATGAQGPAGRPMTPKGNVADVASLPATGNQVGDTYGVAGHFYSWDGAAWQDAGNFKGADGATGPQGPVGQPVNAKGSVAAAGNLPATGNANGDAYEVGGYIYVWNSTSAQWVNMGQWRGANGTNGTNGLSAYQQAQAAGFAGTVTEWLASLKGKDGVSFTYIGAFANAAALPTGTNTGAAATTNDTNHIYLWDATSGWVDNGPIGVQGPQGLQGPVGADGKTAYEVAVANGFSGDVTAWLTSLKGLQGDSAYQVAVNQGYAGTQAQWLASLVGPKGDQGIQGVQGVKGDTGNTGPQGTSLAYIGDFASAGVIPAGTLSQVATSGGHIFINNGTTWVDAGPVAQGPQGPQGIQGVKGDTGATGQSAYQAAVAGGFVGTQAAWLQTLVGPAGASAVDAAIAAGRLPAGATINDYITLTTGPQGPAGADGATGPQGQTGPAISIIGTLTDSSQLPATGTAGTGYAIPDSSTPGTYNCWIWLSTTSQWFNLGHVVGAQGPQGIQGLRGLQGVKGDTGATGPQGTLWIVFARNPQALDGRVGDYFFNSNTQEFFTKTDTVTWASLGHIGGGNLNAPSQTGKWQAYTDTGWQNLPDVINALPSNTDGKIYVLKNGEWVDAPVLDTIPTDSSQYLMKNGAWSRMDTYTLSAVDVTITGGVGTVDLSVARVFRIQNTAATTINITNMPAANRGTTVVIKVYGKVGAFTWNLPSGSIRWFDGSAPPFTNSTTTIVLQWDGTEMVGSVPN

Physico‐chemical properties

protein length:	1183 AA
molecular weight:	120279,82840 Da
isoelectric point:	4,55817
aromaticity:	0,08707
hydropathy:	-0,16746

Domains

Domains [InterPro]

DC_1725
STR
19–73

DC_1725 G3DSA:1.20.5.320 DC_2121 DC_1158 DC_1473 DC_0449

DC_1473
STR
68–123

DC_1473 DC_0108 DC_1473

IPR050149
Unmapped
97–970

IPR050149

DC_2121
ATT
109–163

DC_2121

YP_009207973.2

1 1183

Architecture

STR

ATT

STR

RBD

STR 19-108 | ATT 109-191 | STR 192-681 | STR 688-939 | RBD 940-1183

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1725	STR	DC_1725	19	73	Novel HMM	DC_1725	Central	Low	Positional only	85 proteins / 85 hits
DC_1473	STR	DC_1473	68	123	Novel HMM	DC_1473	Central	Low	Positional only	59 proteins / 59 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	96	138	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
IPR050149	Unmapped	-	97	970	InterPro	Collagen superfamily	-	-	-	-
DC_2121	ATT	DC_2121	109	163	Novel HMM	DC_2121	N-terminal	Low	Positional only	48 proteins / 48 hits
DC_2121	ATT	DC_2121	155	191	Novel HMM	DC_2121	N-terminal	Low	Positional only	48 proteins / 48 hits
DC_0108	STR	DC_0108	189	532	Novel HMM	DC_0108	Central	Low	Positional only	22 proteins / 22 hits
DC_1158	STR	DC_1158	493	681	Novel HMM	DC_1158	Central	Low	Positional only	8 proteins / 8 hits
DC_1473	STR	DC_1473	688	772	Novel HMM	DC_1473	Central	Low	Positional only	59 proteins / 59 hits
DC_1473	STR	DC_1473	757	939	Novel HMM	DC_1473	Central	Low	Positional only	59 proteins / 59 hits
DC_0449	RBD	DC_0449	932	1183	Novel HMM	DC_0449	C-terminal	Low	Positional only	30 proteins / 30 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Ralstonia phage RSF1 [NCBI]	1689679	Uroviricota > Caudoviricetes > Chimalliviridae > Chiangmaivirus RSF1 >
Host	Ralstonia solanacearum [NCBI]	305	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Genbank protein accession

YP_009207973.2 [NCBI]

Genbank nucleotide accession

NC_028899.1 [NCBI]

CDS location

range 154461 -> 158012
strand -

CDS

GTGGTGGGTAAAACCATCCTCGAACTCGACTTGTTGACTGGCCAGATCGACGCTGCGAATTCGTATATCGAAGTGCATGTCGTCGGCCAGGCGGCCAGCGTGAAGGTTCCGTTGGGTGGTGTTACCGTCAACGGTAAGTCGGCCTACGAGGTCGCAGTCGCAGCAGGTTACGTAGGTACGCAGGCCCAATGGTTGGCAAGTCTTCAGGGTGCGAACGGCAAGTCCGCATACCAGTCGGCAGTTGATCAGGGCTATGTTGGCTCGGAAGCCAACTGGGTGGCATCACTTAAGGGCCCGAAAGGTGACCAAGGCATCCAGGGCAATCAAGGCCCTCAAGGCCAGAAAGGTGACACTGGTGCGACGGGTAACTCCGCGTATCAAGACGCCGTTGCTCAAGGCTTTGTCGGCGATCTGCCGACGTGGCTTGCCAGCATCAAAGGCGCCAAAGGCGACAAGGGCGATGCAGGTACGAACGGTACGAACGGCGCCGATGGCAAATCGGCATACGAAGTAGCTGTTGCCGACGGTTTCGTCGGTGATGAACCGACGTGGCTGCTTTCCCTGCACGGCAAGTCCGCGTACGAAGATGCCGTCAACCAGGGTTACGTAGGTGATCTGAACAGCTGGCTGACGTCCCTCAAGGGACCGAAGGGTGATCAAGGCGCGGTCGGCCCGGCCGGCCAAAGCTCGGTCCTCGGCCATCTGGTTGGCTCGGTCGCTACGTCCGCAGATCTGCCCGATCCGTCGGGCTTCCTGCAATCCGACTATTTCTTCGTCGGTACCCACGTCTTCATGAACCTGAATGGTGAATGGGTCGACATGGGCAACTTCCAGGGTCTGCCTGGTAAGGACGGTTCCGGTATCACGGTGCTCGGTTCGCTTCCGTCGACGGCATATCTGCCGACTTCGGGTCAGCGCAGCGGTGACTCGTGGCTCATCGGCAAGTCCATGTGGGTGTGGCAGGGCACGATCTGGCAGGAACAAGGCAACGAAGGTCTGCAAGGTCCTGTCGGTCCGACTGGTGCGACCGGCGCCCAAGGTCCGTCGGCATGGGACGTCATCCGTGCCCAACATCCGGAAGTCAACACGCTGGATCTGTTCGTGCAGTACATCACCGGCCCGCAAGGCGTCAAGGGTGATACGGCGATCTCGTTCGTTGCAGACGGTACTGTTGCAGCGGCGGCCGATCTGCCTGCAACCGGCACGAACAACCACGGCTACCTGGTTGGCGACAACACCAACGGCTACGACTTCTACGTCTGGGTGAATTCCCAGTTCGTGAATTTGGGCCGTAACGTCGGTCCGAAGGGCGACACTGGCGCACCCGGTGCAACCGGTGCTCAGGGTCCTGCTGGTCGTCCGATGACGCCGAAGGGCAACGTAGCGGATGTCGCATCGCTGCCGGCTACGGGTAACCAGGTCGGCGATACGTACGGTGTGGCGGGTCATTTCTACTCGTGGGATGGTGCTGCCTGGCAAGATGCAGGCAACTTCAAGGGTGCCGATGGTGCAACGGGTCCGCAAGGCCCGGTTGGTCAACCGGTGAACGCGAAGGGTTCCGTTGCCGCGGCAGGTAATCTCCCGGCAACTGGCAACGCCAATGGCGATGCTTACGAAGTCGGTGGTTACATCTACGTGTGGAACAGCACGAGCGCCCAATGGGTGAACATGGGCCAGTGGCGTGGCGCCAACGGTACGAACGGTACCAATGGTCTGTCGGCGTATCAGCAAGCGCAAGCTGCTGGTTTCGCAGGCACGGTCACGGAATGGCTGGCTTCGCTCAAGGGCAAGGATGGCGTGAGCTTCACGTACATCGGCGCTTTCGCAAACGCTGCTGCTCTGCCCACGGGTACGAACACCGGCGCTGCTGCGACCACCAATGACACGAACCACATTTACTTGTGGGACGCGACGTCGGGCTGGGTCGACAACGGTCCGATTGGCGTGCAAGGCCCGCAAGGTCTGCAAGGTCCGGTCGGCGCTGACGGTAAAACGGCTTATGAAGTGGCAGTAGCCAACGGTTTCTCTGGCGATGTCACGGCATGGCTCACTTCGCTGAAGGGTCTGCAAGGTGACTCGGCTTATCAAGTCGCAGTCAACCAAGGCTACGCAGGCACTCAGGCACAGTGGTTGGCTTCGCTTGTTGGTCCCAAGGGCGACCAGGGTATTCAGGGCGTTCAAGGTGTCAAGGGCGACACGGGTAACACCGGTCCTCAAGGCACGAGCCTGGCATACATTGGCGACTTTGCATCGGCTGGTGTCATCCCTGCTGGTACGCTCTCGCAAGTGGCTACCTCCGGCGGTCACATCTTCATCAACAATGGCACGACCTGGGTGGACGCGGGTCCGGTAGCCCAAGGTCCCCAAGGTCCTCAGGGGATTCAAGGTGTTAAAGGTGACACTGGGGCAACTGGCCAAAGCGCATACCAAGCAGCCGTCGCTGGCGGATTTGTGGGTACGCAAGCCGCCTGGCTGCAAACCCTCGTCGGTCCTGCCGGCGCTTCTGCGGTCGACGCAGCAATCGCAGCCGGACGACTCCCCGCCGGCGCAACCATCAACGACTACATCACCCTGACGACTGGTCCGCAAGGCCCCGCAGGTGCTGATGGTGCAACTGGCCCTCAAGGCCAGACTGGTCCTGCAATCTCGATCATCGGTACGCTGACAGATTCCTCGCAACTCCCGGCAACGGGTACGGCGGGTACGGGTTACGCAATTCCGGATTCGAGCACGCCTGGAACGTACAACTGCTGGATCTGGTTGTCGACCACTTCGCAGTGGTTCAACCTCGGTCACGTGGTTGGCGCTCAAGGTCCGCAAGGTATTCAGGGTCTGCGTGGTCTGCAAGGTGTGAAGGGTGATACCGGTGCTACCGGTCCGCAAGGTACGTTGTGGATCGTGTTCGCACGCAATCCGCAAGCACTGGACGGTCGTGTTGGCGACTACTTCTTCAACAGCAATACGCAGGAATTCTTCACCAAGACCGACACGGTAACGTGGGCCTCGTTGGGCCATATCGGCGGTGGGAACCTGAATGCCCCGTCGCAAACGGGCAAGTGGCAAGCCTACACCGATACCGGTTGGCAAAATCTGCCCGACGTCATCAACGCGCTTCCGTCGAACACCGACGGCAAGATCTACGTGTTGAAGAACGGCGAGTGGGTCGATGCTCCGGTACTCGATACCATCCCGACCGATTCGAGCCAGTACCTCATGAAGAATGGGGCGTGGTCTCGCATGGATACGTACACGCTCAGCGCTGTGGACGTGACCATCACGGGCGGTGTGGGTACGGTCGACCTTTCGGTTGCCCGTGTGTTCCGTATTCAAAATACGGCGGCTACCACCATCAACATCACCAACATGCCTGCGGCCAACCGTGGTACCACGGTCGTGATCAAGGTGTACGGTAAGGTCGGTGCGTTCACCTGGAACTTGCCGTCTGGTTCGATCCGTTGGTTCGACGGCTCGGCACCTCCTTTCACCAACAGCACGACGACGATCGTCCTCCAGTGGGACGGTACGGAAATGGTCGGCTCGGTTCCGAACTAA

Genome Context

Tertiary structure

PDB ID

2130c885e36a9a285b09fba1ea9455ea9d168394d0a44d9f9d05090d48fa2039

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6644

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Two Asian jumbo phage RSL2 and RSF1 infecting the phytopathogen Ralstonia solanacearum share common features related to the phi-KZ-like phages	Kawasaki,T., Fujie,M., Chatchawankanphanich,O., Ogata,H. and Yamada,T.	2016-07	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature