Protein

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Genbank accession

YP_010768516.1 [GenBank]

Protein name

Phage tail fiber repeat protein

RBP type

Evidence UniProt/TrEMBL

Probability 1,00

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

Evidence RBPdetect

Probability 0,91

Evidence RBPdetect2

Probability 0,96

Protein sequence

MSTKFKTVITTAGAAKLAAATAPGGRKVNITTMAVGDGGGKLPVPDAGQTGLIHEVWRHALNKISQDKRNSNYIIAELVIPPEVGGFWMRELGLYDDAGTLIAVANMAESYKPALAEGSGRSQTCRMVIIVSSVASVELTIDTTTVMATQDYVDDKIAEHEQSRRHPDASLTAKGFTQLSSATNSTSETLAATPKAVKTAYDLANGKYTAQDATTARKGLVQLSSAINSDSKTLAATPKAVKTAYDLANGKYTAQDATTARKGLVQLSNDTNSDSETFAATPKAVKAANDNANRRVPDGRKVNGKPLTNDVNVTSQDIFNSQSIAIGANQNLDNYKTPGLYHQPLNANTSASLKYPENLAGTLVVLKNAGITQIYYVYNTSRSYTRSQYSTGGWTSWTPQDSFPVGAPIPWPSDSVPTGYALMLGQTFDKAVYPLLAAAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDLGTKTTSSFDYGTKTVSTFNHGTKTTNNTGAHTHTVGGRYGGDSIGGKQRVQVSGTNQVSSSAGAHAHTVDIGQHNHTVGIGAHSHSIAIGAHSHTVTVSATGNSENTVKNVAYNYIVRLA

Physico‐chemical properties

protein length:	605 AA
molecular weight:	63701,04990 Da
isoelectric point:	9,22609
aromaticity:	0,06281
hydropathy:	-0,37289

Domains

Domains [InterPro]

IPR022225
ATT
1–151

IPR022225 IPR005068 IPR005068 IPR005068 cd19958 IPR037053 IPR005003 IPR005003 IPR005003 IPR005003

DC_1371
STR
1–250

DC_1371 IPR051934

DC_0163
STR
248–605

DC_0163

SSF88874
STR
396–604

SSF88874

IPR011083
ATT
406–453

IPR011083

YP_010768516.1

1 605

Architecture

ATT

STR

ATT

STR

ATT 1-151 | STR 152-400 | ATT 401-454 | STR 455-605

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR022225	ATT	DC_0271	1	151	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits
DC_1371	STR	DC_1371	1	250	Novel HMM	DC_1371	Central	Low	Positional only	130 proteins / 130 hits
IPR005068	STR	DC_0738	170	211	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
IPR005068	STR	DC_0738	214	255	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
DC_0163	STR	DC_0163	248	605	Novel HMM	DC_0163	Central	Low	Positional only	47 proteins / 47 hits
IPR005068	STR	DC_0738	258	297	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
cd19958	STR	DC_0464	323	401	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
IPR051934	Unmapped	-	328	605	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
SSF88874	STR	SSF88874	396	604	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	401	454	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	406	453	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
IPR005003	Unmapped	-	469	482	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
IPR005003	Unmapped	-	511	522	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
IPR005003	Unmapped	-	545	554	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
IPR005003	Unmapped	-	564	574	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage STYP1 [NCBI]	2939039	Uroviricota > Caudoviricetes > Peduoviridae > Peduovirus STYP1 >
Host	Salmonella enterica subsp. enterica serovar Typhi [NCBI]	90370	Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Genbank protein accession

YP_010768516.1 [NCBI]

Genbank nucleotide accession

NC_073747.1 [NCBI]

CDS location

range 19682 -> 21499
strand +

CDS

ATGAGCACAAAATTTAAAACCGTTATCACTACTGCCGGAGCCGCAAAGCTGGCAGCGGCAACCGCACCGGGAGGGCGGAAGGTCAACATTACCACGATGGCCGTCGGGGATGGCGGTGGTAAATTGCCTGTCCCGGATGCCGGACAGACCGGGCTTATCCACGAAGTCTGGCGACATGCGCTGAACAAAATCAGTCAGGACAAACGAAACAGTAATTATATTATCGCAGAGCTGGTTATTCCGCCGGAGGTGGGCGGTTTCTGGATGCGTGAGCTTGGCCTGTACGATGATGCGGGAACGTTAATTGCCGTGGCGAACATGGCCGAAAGTTATAAACCTGCCCTTGCCGAAGGCTCAGGGCGTTCGCAGACCTGCCGCATGGTCATCATCGTCAGCAGTGTGGCCTCAGTGGAGCTGACCATTGACACCACAACGGTGATGGCGACGCAGGATTACGTTGATGACAAAATTGCAGAGCATGAACAGTCACGACGTCACCCGGACGCCTCGCTGACCGCAAAAGGTTTTACTCAGTTAAGCAGTGCGACCAACAGCACGTCTGAAACACTGGCCGCAACGCCGAAAGCAGTAAAGACCGCCTATGACCTTGCTAACGGGAAATATACTGCGCAGGATGCCACCACAGCGCGAAAAGGCCTTGTTCAACTCAGTAGCGCCATCAACAGCGATTCTAAAACGCTTGCGGCAACGCCAAAGGCGGTTAAGACAGCGTATGACCTTGCTAACGGGAAATACACTGCGCAGGACGCTACTACAGCGCGAAAAGGGCTTGTTCAGCTCAGTAATGACACCAACAGCGATTCTGAAACATTTGCCGCGACTCCGAAAGCGGTGAAAGCTGCCAATGATAATGCAAACAGACGCGTTCCTGACGGGCGTAAGGTCAATGGCAAACCACTGACCAATGATGTCAATGTTACATCGCAGGATATTTTTAACAGTCAGAGTATTGCGATTGGCGCAAACCAGAATCTGGATAATTACAAAACGCCGGGACTGTACCATCAGCCACTGAATGCGAATACAAGCGCATCGCTGAAATACCCGGAGAATCTTGCAGGTACTCTGGTTGTGCTTAAAAATGCCGGAATAACACAAATTTACTATGTCTATAACACATCAAGAAGCTATACCCGCAGCCAGTATTCAACGGGGGGCTGGACATCATGGACACCGCAGGATTCATTTCCGGTAGGTGCTCCAATCCCGTGGCCTTCTGATTCAGTACCTACAGGCTATGCCCTGATGCTGGGGCAGACTTTTGATAAAGCAGTCTATCCCCTGCTTGCAGCAGCTTATCCGTCAGGGGTGATTCCAGATATGCGCGGCTGGACAATCAAGGGCAAACCCGCCAGTGGTCGCGCCGTATTATCACAGGAACAGGACGGAATTAAATCACATACCCACAGTGCCAGTGCATCCAGTACGGATTTAGGGACGAAAACAACCAGTTCGTTTGATTACGGGACAAAAACGGTCAGCACGTTTAACCACGGCACAAAAACGACAAACAATACGGGAGCGCATACACACACTGTCGGTGGTCGTTACGGTGGTGACTCCATCGGGGGTAAACAACGCGTACAGGTATCAGGAACCAACCAGGTGTCAAGCTCTGCGGGAGCACACGCCCATACAGTCGACATTGGTCAGCATAATCACACGGTTGGCATTGGTGCTCACAGCCATTCCATTGCGATTGGCGCGCATAGTCATACCGTCACTGTAAGTGCCACAGGTAATTCAGAGAACACCGTAAAAAACGTTGCGTATAACTATATTGTGAGGCTGGCATAA

Genome Context

Tertiary structure

PDB ID

aac2d025b5f30ccbc4fb5f29fa26d4462d4302748881ec83708e428f9ba33358

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,8198

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Whole genome sequence analysis of Salmonella Typhi isolated in Thailand before and after the introduction of a national immunization program	Dyson,Z.A., Thanh,D.P., Bodhidatta,L., Mason,C.J., Rabaa,M.A., Vinh,P.V., Thanh,T.H., Thwaites,G.E., Baker,S. and Holt,K.E.	2017	28060810	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature