Protein

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Genbank accession
ANM47308.1 [GenBank]
Protein name
putative host attachment protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MELKDALVPALTAGLGYFAGRESAESKVIDPEQSQELIAMLQQRIALMDAKNLASAALVAALKDESETGQLVQAQLQAQLADLNAKLSSQQAAIFSNFPVVFGAGDPSLGGWIKGRDGLLISRALPNFVPGTNGYLATATGYGVAPPATGIAVSDVSLKAAARPISIGKSMNTSLAIVLKRGYFGGMSAILNFAEDVADDPDFIASAWVHDGSYRAHVVAIPIGRNSLLLTILGTSKTPSGHTAASWNGLVVRDATVADPIPTKAQRSSWGSGAVCITLAHRTARNLTLRSWGIVANPLAQYMETNAVAWDDASLSHTRRAGNTTILSRINTGALPRFYRVDDENMDYTTVDLSSSAYM
Physico‐chemical
properties
protein length:359 AA
molecular weight: 37890,55610 Da
isoelectric point:6,21701
aromaticity:0,06685
hydropathy:0,06435

Domains

Domains [InterPro]
Coil
Unmapped
73–93
Coil
ANM47308.1
1 359
Architecture
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ANM47308.1
1 359
Domain Start End Length (AA) Confidence
N-terminal 1 113 113 0,9865
Central domain 114 312 200 0,1400
C-terminal 313 359 46 0,9745
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-113
Central
114-312
C-terminal
313-359

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiYY
[NCBI] 		1852644 Viruses > Riboviria > Orthornavirae > Duplornaviricota > Vidaverviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ANM47308.1 [NCBI]
Genbank nucleotide accession
KX074202 [NCBI]
CDS location
range 52 -> 1131
strand -
CDS
ATGGAGCTTAAAGACGCGCTGGTGCCGGCCCTGACGGCCGGCTTGGGTTATTTCGCAGGACGGGAGTCCGCCGAATCGAAGGTCATTGATCCCGAGCAATCTCAAGAGTTGATCGCCATGCTCCAGCAGCGCATTGCGCTGATGGACGCGAAAAACCTCGCCTCGGCGGCGTTGGTGGCAGCTCTTAAGGACGAGTCCGAGACTGGTCAGTTGGTCCAAGCTCAGCTGCAAGCGCAGCTGGCCGATCTGAACGCCAAGCTCTCGTCGCAGCAGGCTGCGATCTTCTCCAACTTCCCCGTTGTCTTCGGGGCCGGCGATCCGTCGCTGGGTGGTTGGATCAAGGGTCGCGATGGTCTGCTCATCTCGCGTGCGCTCCCCAACTTCGTGCCTGGCACGAATGGCTACCTGGCTACGGCCACGGGCTACGGGGTGGCGCCTCCAGCTACCGGGATCGCGGTGAGCGATGTCTCCCTTAAGGCGGCCGCTCGTCCCATCTCGATCGGTAAGTCGATGAACACGTCGCTCGCGATTGTTCTGAAGCGCGGTTACTTTGGCGGCATGTCCGCCATCCTGAACTTCGCTGAGGACGTCGCCGACGATCCCGACTTCATCGCCTCTGCGTGGGTGCACGACGGTAGTTACCGTGCGCACGTTGTGGCTATTCCGATCGGGCGCAACAGCCTGCTGCTCACGATCTTGGGTACGTCCAAGACCCCCTCGGGGCACACGGCTGCGTCTTGGAACGGTCTGGTTGTACGCGATGCTACTGTCGCTGACCCGATCCCGACCAAGGCGCAGCGATCCTCGTGGGGTTCGGGCGCGGTGTGCATCACCCTGGCGCACCGCACTGCTCGCAACCTGACGCTCCGTTCTTGGGGCATCGTCGCGAACCCGCTCGCTCAGTACATGGAGACCAACGCTGTGGCGTGGGACGACGCGTCGCTGAGCCACACCCGCCGTGCAGGCAACACAACGATTCTCTCTCGCATCAACACCGGTGCCTTGCCCCGATTCTATCGGGTGGACGATGAGAACATGGACTACACTACCGTCGATCTTTCGAGTTCGGCATACATGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
3011fcc90d1b2ec5c372f137413434da504166d1406477dc1a5b9904b59314a2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3795
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of the first double-stranded RNA bacteriophage infecting Pseudomonas aeruginosa Yang,Y., Lu,S., Shen,W., Zhao,X., Shen,M., Tan,Y., Li,G., Li,M., Wang,J., Hu,F. and Le,S. 2016 27934909 GenBank