Protein

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Genbank accession
YP_009855969.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,50
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MADLKQIQFKRSKTAGARPTTAQIAEGELAINLKDRTFFTSDGTQIIDLGLAKGGQIDGNITQTGNYTQTGNFSTSGDISARNLNATTGVTAGAEVVSNIGAFRAKATSSSNAHLRFQGEEVAASKIYERGILYADPQTASYGQIALRVQNGSAADSANAVFFWNGRGDFTAPRDVYAQRSRLSIESIAPTMNTNRLFTAYKPFGAQQYSWDDSVTYTKATGALNYVYKGRANIEGTIWHNIIDERTGAENVWYTGSGPENKMHSLASRGGKGHGSYTGSLMIGANNLGEYSGMGDSSIALGDNDTGFKWTGDGAFSIMSNAQKIVDIYNSATKPFYIKKCTKIAHSDNNSDNLFPSNNNALLEIDTSLDGNNAGGNGVTLIGYNSGSRYYHYFRGRGSANFDMDNGVYISKGGLSVTGNISSTGQVQPSNFSNFDSRYQNLLQLGGNVNLDTLAGADHAGEYAQHSNVNTSLALNYPEALAGHLTVTSGAGVQQRYHVYNSTRVYLRAKYSSDSWRPWDRVVTEDYLKTGIPAQFVSKNSDGFRIAYGSYGFFIRNDGGSTYFMLTNSGDQMGTWNNLRPLIINNSTGQVTIATPLIVSHSSGLTVNSTAGDAISWGNAGACLANDGNLKGSRWKSFGGSDWAGDALSWVHGQNVSKSGDTMTGALRVTNWISADNVRTYNDIELSKNARRHIRFQDSRGADAYIYKDAGANPLRINLGADGGDWQFQVGGTFYASGNGDFNDVRIRSDIRLKTNLVKIESATDKIEKLNGYVYDKKQSLHDSEYNSQEAGLIAQELEKVLPEAVSELSDGTKTISSSATIALLVESIKELNSRIKELESK
Physico‐chemical
properties
protein length:842 AA
molecular weight: 90996,09880 Da
isoelectric point:6,55981
aromaticity:0,09620
hydropathy:-0,46805

Domains

Domains [InterPro]
DC_0538
STR
1–494
DC_0538 IPR048390 IPR030392 Coil
cd19958
STR
444–522
cd19958 IPR030392
DC_1202
STR
467–842
DC_1202
YP_009855969.1
1 842
Architecture
STR
ATT
STR
STR 1-533 | ATT 534-584 | STR 585-842
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009855969.1
1 842
Domain Start End Length (AA) Confidence
N-terminal 1 39 39 0,8604
Central domain 40 238 200 0,2640
C-terminal 239 842 603 0,7903
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-39
Central
40-238
C-terminal
239-842

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacter phage vB_EclM_CIP9
[NCBI] 		2696340 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Kanagawavirus
Host Enterobacter cloacae
[NCBI] 		550 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009855969.1 [NCBI]
Genbank nucleotide accession
NC_048849 [NCBI]
CDS location
range 50163 -> 52691
strand +
CDS
ATGGCAGATTTAAAACAAATACAATTTAAGCGTTCTAAAACAGCAGGCGCCAGACCAACAACAGCTCAAATTGCTGAAGGCGAACTTGCTATTAACCTTAAAGATCGCACATTTTTTACTAGCGATGGTACTCAAATTATAGATCTTGGTCTTGCTAAAGGCGGCCAGATTGATGGTAATATTACTCAGACCGGTAATTACACCCAGACTGGTAATTTCAGTACTTCTGGGGATATTTCAGCTCGTAATTTAAACGCCACTACCGGTGTTACTGCTGGTGCTGAAGTTGTTTCAAATATAGGTGCATTTAGAGCAAAAGCTACTAGCTCTTCAAATGCTCATTTACGCTTCCAAGGCGAAGAAGTTGCAGCTTCTAAAATCTATGAACGCGGTATTTTATACGCAGATCCACAAACTGCTTCTTACGGGCAAATTGCATTACGTGTTCAAAATGGCTCTGCCGCTGATAGTGCGAACGCAGTATTTTTCTGGAATGGGCGGGGTGATTTCACTGCACCAAGAGATGTATATGCACAACGTTCTCGTCTGAGCATCGAATCTATTGCTCCTACTATGAACACTAATCGCCTTTTTACTGCATATAAGCCTTTTGGTGCACAGCAATATAGTTGGGACGACTCAGTAACTTACACAAAGGCCACAGGTGCTTTAAACTATGTGTATAAAGGTCGCGCAAATATAGAAGGGACTATTTGGCATAACATTATTGATGAAAGAACCGGTGCAGAGAATGTTTGGTACACGGGTTCTGGTCCTGAAAATAAAATGCATTCTTTAGCGAGTCGCGGCGGCAAAGGACACGGTTCTTATACCGGCTCTTTAATGATCGGTGCTAATAATCTCGGAGAATACTCTGGAATGGGGGATTCTTCTATAGCCCTTGGTGATAACGATACTGGATTTAAATGGACCGGTGATGGTGCTTTTAGTATTATGTCAAATGCCCAGAAAATAGTTGACATATATAACTCTGCCACAAAACCGTTTTATATTAAAAAATGTACTAAAATAGCACATAGTGATAATAATTCAGATAATTTGTTCCCATCAAATAATAATGCTTTATTAGAAATTGACACTTCATTAGACGGAAATAATGCTGGTGGTAATGGCGTAACTCTTATTGGGTACAACTCTGGAAGTAGGTATTATCATTATTTCCGCGGCCGCGGAAGTGCAAATTTTGATATGGATAATGGTGTATACATAAGTAAAGGCGGATTGTCAGTTACTGGCAATATATCATCTACTGGTCAGGTTCAGCCTTCTAACTTTAGTAACTTTGATTCTCGCTATCAGAATTTGCTACAACTTGGTGGCAATGTTAACTTAGATACGTTAGCTGGGGCTGACCATGCCGGTGAATATGCCCAGCACTCTAATGTAAACACATCTTTAGCTTTGAACTATCCTGAAGCACTCGCAGGTCATTTAACAGTTACTTCTGGTGCGGGTGTTCAACAAAGATACCATGTTTATAACAGCACCCGTGTGTATTTACGTGCGAAATATAGTTCTGACTCATGGCGCCCATGGGACCGGGTAGTAACAGAAGATTATTTAAAAACTGGAATTCCTGCGCAGTTTGTATCTAAAAACTCTGATGGTTTCCGTATTGCATATGGTAGCTACGGGTTCTTTATCCGTAACGATGGTGGCAGTACTTATTTCATGTTGACCAACTCTGGCGACCAAATGGGTACTTGGAACAATCTTCGCCCGTTAATTATAAACAACTCGACAGGCCAAGTTACTATTGCTACTCCATTAATTGTATCTCATTCTTCTGGACTTACAGTAAATAGCACGGCGGGTGATGCTATTTCATGGGGTAATGCAGGTGCTTGTTTAGCAAACGATGGTAACTTAAAAGGTTCACGCTGGAAATCTTTTGGCGGTTCTGATTGGGCGGGTGATGCTTTAAGCTGGGTTCACGGTCAAAACGTTTCTAAGTCTGGCGATACTATGACCGGCGCATTAAGAGTTACTAACTGGATTAGTGCCGATAACGTTAGGACTTATAATGATATAGAATTAAGTAAAAACGCTCGTCGACATATAAGATTTCAGGATTCTAGGGGTGCAGATGCATATATCTATAAAGATGCTGGAGCGAATCCGCTTAGAATTAATTTAGGTGCCGATGGTGGAGATTGGCAATTCCAGGTAGGTGGGACTTTTTACGCTAGCGGTAATGGTGATTTCAACGATGTTAGAATTCGTTCTGATATAAGATTGAAAACTAATTTAGTTAAAATAGAAAGTGCTACTGATAAAATAGAAAAGCTAAATGGCTACGTCTATGATAAAAAACAATCTTTACATGATTCAGAGTACAACTCTCAAGAAGCCGGATTGATTGCGCAAGAATTAGAAAAAGTACTTCCTGAAGCGGTTTCAGAACTTTCTGACGGAACTAAAACTATTTCTAGTTCTGCAACCATAGCGCTTTTAGTAGAAAGTATTAAAGAGCTTAATTCTAGAATTAAAGAACTTGAATCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b87bdc6c453d5d323b32983b7a797e0f7f9281adcb8be3d324f62fbe649f7158
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6088
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of the Enterobacter Phage vB_EclM_CIP9 Wang,K., Tamayo,M.G., Penner,T.V., Cook,B.W.M., Court,D.A. and Theriault,S.S. 2020 — GenBank