Protein

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Genbank accession
BAS69558.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAFDGAIKSLMQGVSQQVPRERLDGQVSVQLNRLSDVVNGNRRRPGARYLSTLPILANFNDRVFATYVDVADATNHVLVNTEDGQLLVLSEDFGTVLHTGMYPYLIASTANAIQTGTLRGALYLANTEQRPTLVHGPTVQQDPAKTGFFFVRVPAFSKDYDITLSNSTGTYTYTHRTPNGQGGGDADLAKPSYVVEKLVDLINDETATHGITAHAFDAYMYLVSDTATLAVTTNAGTTYATASNTARVSLLSDLPARLPTIADGILCAVGTTPRSFTWYEFESETSIWKEAGAYGSPTGFAGMPIKLTLDGSYTVSTPEYEGRLAGSDTTNEDPGFIEHGLTGFGAYQGRLVILAGPEVCMSASGTPERWYRSTVTTLLTEDPINVFSGAATTTNFSHCVQFNKDLLLFSRSCQAVVPSSNAAITPQTAQIVITSQYTTDTLAAPTVVGRSVLYPMPRTEAFAGILEMIPSNTTDSQYTSNDVTAHIPRYMPGSIRSITASTTSNSSVLLCTGDDRSVFIQDYLWSGDEKVQSAWHQWSVPYPIVCAWFVRDRVYLGMRDGNTIVVGTVEPQAGATYLSYTRPFSDLYSLVTVTDGVTTFPVQLRNAYLSGVEPFLTFADTSKGGMWVGIESIDTTTWEVRTVRNVPSGQYFLGLRYMSVLSPTPPLVRDANGVVIGTSRTLLVRYELTVKDSGEFHAAISDSSRVLADGTYSSLVYSNVELLPNEPTSASLGRVVVPVRAQAQETVATFESDADTDLCILDIEYILQYRARRKRL
Physico‐chemical
properties
protein length:776 AA
molecular weight: 84366,68330 Da
isoelectric point:5,01419
aromaticity:0,09407
hydropathy:-0,08003

Domains

Domains [InterPro]
DC_0058
STR
1–776
DC_0058
IPR058003
TTP
5–775
IPR058003
BAS69558.1
1 776
Architecture
STR
STR 1-776
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BAS69558.1
1 776
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9940
Central domain 142 340 200 0,1256
C-terminal 341 776 435 0,1775
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-340
C-terminal
341-776

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PPWS1
[NCBI] 		1685500 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Kotilavirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAS69558.1 [NCBI]
Genbank nucleotide accession
LC063634 [NCBI]
CDS location
range 27918 -> 30248
strand +
CDS
ATGGCGTTCGATGGCGCGATTAAGAGCTTAATGCAGGGCGTGTCTCAGCAGGTTCCGCGTGAACGACTGGACGGGCAAGTATCTGTACAGCTCAACCGTTTATCCGATGTGGTGAACGGCAACAGACGTAGACCGGGCGCTCGTTACTTGAGCACCCTACCTATTCTGGCAAACTTCAATGACCGTGTATTCGCTACATACGTGGATGTGGCTGACGCTACTAATCACGTTCTGGTGAACACCGAAGACGGACAGTTACTGGTTCTCTCAGAGGACTTCGGTACTGTACTGCACACGGGTATGTATCCGTACCTAATCGCTAGCACAGCTAACGCTATCCAGACAGGCACCCTACGTGGTGCCTTGTACCTAGCGAACACTGAGCAGCGCCCTACGCTGGTACATGGTCCGACCGTACAGCAAGACCCTGCTAAGACAGGTTTCTTTTTCGTTCGAGTCCCTGCATTCAGTAAGGACTACGACATCACTTTATCGAACTCCACAGGTACGTACACGTACACTCACCGCACCCCTAACGGGCAAGGTGGTGGTGATGCTGACTTAGCAAAACCGTCGTACGTAGTGGAGAAGTTAGTAGACCTTATTAACGACGAGACAGCAACCCACGGTATCACTGCACACGCATTCGATGCGTACATGTACCTTGTGAGCGACACAGCAACATTGGCTGTCACGACTAACGCAGGGACGACGTACGCCACTGCCAGCAATACGGCGCGTGTCTCATTGCTGTCCGACCTACCTGCTCGACTTCCTACCATTGCTGACGGTATACTATGTGCTGTTGGGACTACGCCACGTTCCTTTACGTGGTATGAGTTCGAATCTGAAACCTCTATCTGGAAGGAGGCAGGGGCGTACGGTAGTCCTACAGGTTTCGCGGGTATGCCCATCAAGTTAACGCTGGATGGTTCCTACACTGTGAGCACACCGGAGTACGAGGGTCGATTAGCAGGTTCCGATACAACGAATGAAGACCCCGGCTTTATCGAACATGGGCTGACAGGCTTCGGCGCTTATCAAGGCCGCTTGGTTATCTTGGCTGGACCAGAGGTATGTATGAGCGCATCGGGTACACCTGAGCGCTGGTACAGGAGTACAGTGACGACACTGCTTACAGAAGACCCTATCAACGTGTTCTCTGGTGCTGCGACTACCACTAACTTTAGCCACTGCGTACAGTTCAACAAAGACTTGCTGTTGTTCTCCCGTTCGTGTCAGGCTGTTGTGCCTAGTAGCAACGCTGCTATCACACCACAGACTGCACAGATTGTTATTACGTCACAGTACACGACGGACACACTTGCAGCGCCTACAGTAGTAGGGCGCTCTGTGCTGTACCCTATGCCGCGTACTGAAGCCTTCGCTGGTATTCTGGAGATGATTCCGAGTAACACGACTGATTCCCAGTACACGTCAAACGATGTGACTGCACATATCCCAAGGTACATGCCCGGAAGTATTCGAAGCATCACCGCTAGCACTACGTCAAACTCCAGTGTGTTACTCTGCACAGGGGATGACCGTTCCGTGTTCATCCAAGACTACTTGTGGTCTGGTGATGAAAAGGTACAGTCTGCGTGGCACCAGTGGAGTGTACCTTATCCTATTGTGTGTGCATGGTTCGTACGGGACCGCGTGTACTTGGGTATGCGTGATGGTAACACCATTGTGGTGGGCACAGTCGAACCGCAGGCAGGTGCCACGTACTTATCGTACACTCGCCCGTTCTCTGACTTGTACTCGCTGGTGACCGTGACAGATGGTGTAACAACGTTTCCTGTCCAATTGCGCAATGCGTACTTATCCGGTGTTGAACCCTTCCTGACCTTTGCTGACACCAGTAAAGGTGGTATGTGGGTTGGTATCGAATCCATCGACACCACTACATGGGAGGTCCGTACAGTGCGTAACGTCCCTAGTGGGCAGTACTTCCTTGGGTTACGGTATATGAGTGTACTGTCACCTACGCCGCCGCTGGTACGTGATGCCAACGGTGTCGTTATCGGTACGAGTAGGACGTTGCTAGTCCGGTACGAGTTGACTGTTAAAGACTCAGGTGAGTTCCACGCCGCTATCTCAGATAGTTCCCGTGTTCTCGCCGATGGTACGTACTCCAGTTTGGTTTATTCCAACGTGGAGCTACTGCCTAATGAACCTACAAGTGCGTCATTAGGTCGTGTTGTAGTACCTGTACGAGCACAGGCACAGGAGACTGTGGCTACGTTCGAATCGGATGCCGACACCGACCTATGCATCCTAGACATTGAGTACATCCTACAGTACAGAGCAAGGAGGAAAAGACTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e7fc72055e54e11a1d363787bebedb292f7f94e4e523bbb2991a6d34ff29d9e8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8697
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequence of Pectobacterium carotovorum Phage PPWS1, Isolated from Japanese Horseradish [Eutrema japonicum (Miq.) Koidz] Showing Soft-Rot Symptoms Hirata,H., Kashihara,M., Horiike,T., Suzuki,T., Dohra,H., Netsu,O. and Tsuyumu,S. 2016 27103734 GenBank