Protein

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Genbank accession
XAG97418.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,72
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MIKFHKVSGKPAKVESGDENIWFSYPNGIYVADNQGNPRLISPGKMIGDAVPVGVPNEPGLFYYNTSNKKNYISTAEKWVEIGTGSIPGTGGGSNIAGNVLIDDAADNYTSVDVEGALAEIAEKFPWYFGKMQLKDFNGDINTLLKSTENYITTSATNRPNDKTGWLIQRKASNNNTYGFVIGDDGTAQTRVNNKFTPLAAQADLAKLQDTVDSSLGELKVNVGKGLASDGKTLANGQTISLAQDILDKIDAAGAGANFVKKAGDTMTGPLVMKAGSGQVSQVQFSSTGSANNVAILDDPRGTSKNSPYGGKEGGSRFRIANVKKNFDIMSAYSDGSVDIHANGPRAVFGNASTNGRTTILNNNNSGGTSVDIVAPFSDVPLFVKGKNGQLHYKVNGGMNSLLSGNSSSGRKNLRIAGMGSNSELATLYFEAWNTRAKGKIHSGSAINVGFNHETSKGTGDGDVCLRIFPRKAGLNGEANALRNYAVLYYEQYSQTLVVDSFKGNANFTSNERNNFVRLSSDGFITRSSVKYKNPIKKFEEDALSKVKEVTPELYAYKNDPKQSTQLGFIIEHGLPQEVVEMEGRGVNAYALTAYLWRATQQLSQEVDSLKEELKNLRNS
Physico‐chemical
properties
protein length:620 AA
molecular weight: 66668,52160 Da
isoelectric point:8,75437
aromaticity:0,08387
hydropathy:-0,46935

Domains

Domains [InterPro]
DC_1220
STR
4–620
DC_1220
Coil
Unmapped
600–620
Coil
XAG97418.1
1 620
Architecture
STR
STR 4-620
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAG97418.1
1 620
Domain Start End Length (AA) Confidence
N-terminal 1 160 160 0,9810
Central domain 161 359 200 0,0525
C-terminal 360 620 260 0,9807
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-160
Central
161-359
C-terminal
360-620

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterococcus phage VRE9_2
[NCBI] 		3141816 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Enterococcus faecium
[NCBI] 		1352 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAG97418.1 [NCBI]
Genbank nucleotide accession
PP680568.1 [NCBI]
CDS location
range 132784 -> 134646
strand +
CDS
ATGATTAAGTTTCACAAGGTTAGCGGCAAACCCGCTAAAGTAGAATCTGGCGATGAAAATATTTGGTTTTCTTATCCAAACGGTATTTATGTTGCCGATAATCAAGGCAACCCACGACTAATTTCCCCAGGGAAAATGATTGGCGATGCTGTTCCTGTTGGAGTACCAAACGAACCAGGTCTATTTTATTATAATACATCAAATAAGAAAAACTATATTTCTACCGCAGAAAAATGGGTTGAAATTGGTACTGGTAGTATTCCAGGGACAGGAGGAGGCAGCAATATCGCTGGCAATGTTTTAATCGACGATGCCGCCGATAATTATACTTCGGTCGATGTTGAGGGCGCTCTTGCTGAGATTGCCGAAAAATTCCCATGGTACTTTGGTAAAATGCAATTAAAAGATTTTAATGGTGACATTAATACTCTATTAAAATCCACTGAAAATTATATTACAACTAGCGCCACAAATCGCCCCAATGACAAAACAGGTTGGCTCATCCAACGTAAGGCTTCTAATAACAATACTTATGGATTCGTCATTGGTGATGATGGCACCGCCCAAACAAGGGTCAACAATAAGTTCACCCCACTAGCGGCCCAAGCCGACCTCGCCAAACTACAAGATACTGTTGATTCCTCTCTTGGAGAATTAAAGGTAAATGTAGGGAAAGGATTAGCTTCTGATGGAAAGACATTAGCAAATGGGCAAACTATTTCATTGGCACAAGATATTTTAGATAAGATTGATGCTGCCGGAGCTGGAGCTAATTTTGTTAAAAAAGCTGGAGATACTATGACTGGTCCTCTAGTAATGAAAGCTGGTTCTGGACAAGTTTCTCAAGTACAATTTAGTAGTACAGGTTCTGCTAATAATGTAGCAATATTGGATGATCCAAGAGGGACGTCCAAGAATTCTCCTTATGGAGGGAAAGAAGGCGGTTCTCGTTTTAGAATTGCTAATGTGAAAAAGAATTTCGATATTATGTCGGCTTATAGTGATGGGTCGGTTGATATCCATGCAAATGGTCCTCGTGCGGTATTTGGCAATGCAAGCACTAATGGACGAACTACTATTTTAAATAATAATAATAGTGGTGGGACTTCAGTTGATATTGTTGCGCCTTTTAGTGACGTTCCATTATTTGTTAAGGGTAAGAATGGACAATTACATTATAAGGTTAATGGTGGAATGAACAGTTTGCTTTCTGGTAACAGTAGCAGTGGTCGTAAAAATCTACGTATTGCTGGTATGGGAAGTAATTCTGAATTAGCTACATTGTATTTTGAAGCATGGAATACAAGAGCTAAAGGTAAAATTCATTCTGGTTCGGCTATTAATGTTGGTTTTAACCATGAGACTTCTAAGGGTACTGGTGATGGGGATGTATGTCTACGTATTTTCCCAAGAAAAGCTGGGCTTAATGGTGAGGCAAATGCTTTGAGAAACTATGCTGTATTATATTATGAGCAATATAGTCAGACTTTAGTTGTTGACTCATTCAAGGGTAATGCAAACTTTACAAGCAACGAACGTAATAATTTTGTACGTTTATCTTCTGATGGTTTTATTACACGTTCTTCAGTAAAATATAAGAATCCTATTAAGAAATTTGAAGAAGATGCTTTATCAAAAGTTAAAGAAGTTACACCCGAATTATATGCCTATAAAAATGATCCAAAACAAAGTACTCAATTAGGATTTATTATTGAACATGGTCTTCCCCAAGAGGTAGTAGAGATGGAAGGGCGAGGCGTGAACGCTTATGCGCTGACAGCTTACTTATGGAGAGCAACGCAACAACTGTCTCAAGAAGTAGATTCATTAAAAGAAGAATTGAAAAATTTAAGAAATAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ed4b9dbdb119cb9c6a3327bd897fbbb4ff81914a5110b296e8bf3c40e431602e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6196
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage library of National Institute of Infectious Disease Japan Azam,A.H., Ojima,S. and Kiga,K. 2022-12-05 — GenBank