Protein

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Genbank accession
XYE78036.1 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYVTTSYGRPIQGVSQQPDRIRLEGQCTLQENYIPDVVKGLTKRPSTYLVGKIADHGISALSKFHSYDRGDEAYFMCIEPMTNTVKVFNSDGEPQVVNGTTTYVENSEPWKQLDMRTIGDFTFITNKTVPVMMSSEKSPVQSTMGIIYCQYATYGKTYKIMADGAVIATYTTKDGGSASDIKDVATDNVALQLYKQIHGDPTASPVIPANPTYDAELHGNVIYVTKRDGGDFKLTTSDSQKGEDLIAAKGSVKSVNQLPPIAPNGFVLRITGEGKSTKDDYWLKAEVSNESKIRWVESVQPNIPISFDATTMPHVLIRESISGGVATFTLKPADWDKREVGGEDSNPIPSFIDEDNPIPIQATGVFQNRLFFLSGEAWIASRSNLFFNFWRESTQAEVDTDPLDGYADTDRVNNLYQYQILNGSLAIFADQAQFIIDGSKPVTKANLTLQQVTAYPNNVHAQPQAGGENIFFAYDASGFTGIRELFTDNYTDTKKAYPITDYVSKYIEGQCTQLLASSNFNSMMVRTEVNPSVVYVYDWLWQAEQKVQSAWHKWVFDGNILFLFYLSDFMYVVYSKDNKTYVDYLHMVNDPSDYGLDYSIKLDHKVSVNAVYNHSLKKYSIQLPYSRDDVILTVGNGGYETMLGSAFVATHEGNGVWSTTERISDEKDLTVVCGVKYKSRYVPTQPVVKDARDRVIGLDSIIMSNMYVHYELSGFLEMLVKPKQGQERVYRFFGRWMGSANNLVGSPILENGTYRAPIRQRAEDLQITIQSDSHYPLTIRDIEIDGTFHQRGQRI
Physico‐chemical
properties
protein length:796 AA
molecular weight: 89356,36360 Da
isoelectric point:5,25786
aromaticity:0,11181
hydropathy:-0,36407

Domains

Domains [InterPro]
IPR058003
TTP
1–796
IPR058003
XYE78036.1
1 796
Architecture
TTP
TTP 1-796
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYE78036.1
1 796
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9922
Central domain 139 337 200 0,1680
C-terminal 338 796 458 0,1769
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-337
C-terminal
338-796

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF38
[NCBI] 		3424006 Viruses > unclassified bacterial viruses >
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYE78036.1 [NCBI]
Genbank nucleotide accession
PV648004 [NCBI]
CDS location
range 39290 -> 41680
strand +
CDS
ATGGCCTATGTAACTACCAGCTATGGCAGACCTATTCAGGGTGTGTCACAGCAACCTGACAGGATTAGGCTAGAGGGGCAGTGTACCCTACAAGAGAACTACATACCTGACGTGGTTAAGGGTCTTACTAAGAGGCCATCAACTTATCTTGTAGGAAAGATAGCTGACCACGGCATTAGTGCTCTCTCTAAATTCCACTCATATGATAGAGGTGATGAAGCCTACTTCATGTGCATAGAGCCTATGACTAACACAGTCAAGGTATTTAACTCTGATGGTGAGCCGCAGGTTGTAAACGGCACTACTACTTATGTAGAGAACTCTGAGCCTTGGAAGCAGTTGGATATGCGCACCATAGGTGACTTCACATTCATCACTAACAAGACTGTTCCTGTTATGATGTCAAGTGAGAAATCACCAGTTCAGTCAACTATGGGTATTATTTACTGTCAGTATGCTACCTATGGTAAGACTTACAAGATAATGGCAGACGGAGCTGTAATTGCTACCTACACCACTAAAGATGGCGGCTCTGCATCTGATATTAAAGATGTGGCAACTGATAACGTAGCGTTGCAACTCTACAAGCAGATTCATGGTGACCCAACAGCAAGCCCTGTGATACCTGCTAACCCTACGTATGATGCGGAGTTACATGGTAATGTTATCTATGTGACTAAGAGGGATGGCGGAGACTTCAAGCTTACCACTAGTGACTCACAGAAGGGTGAGGACTTGATAGCTGCTAAGGGTTCTGTGAAATCTGTTAACCAATTACCGCCTATTGCACCTAACGGGTTCGTACTAAGAATCACTGGTGAGGGTAAGTCAACTAAGGATGACTACTGGCTAAAAGCGGAAGTTAGTAACGAATCAAAGATAAGGTGGGTTGAGTCAGTACAGCCAAATATCCCAATATCTTTCGATGCTACGACTATGCCACATGTGCTTATTCGTGAGTCTATAAGTGGTGGTGTTGCTACCTTTACCCTTAAGCCAGCTGATTGGGATAAGAGGGAAGTTGGCGGTGAGGATAGTAACCCTATTCCAAGCTTTATTGATGAGGATAACCCCATACCTATTCAGGCCACAGGTGTATTCCAGAACAGGTTGTTCTTCTTGTCTGGTGAAGCTTGGATAGCGTCAAGGTCTAATCTTTTCTTTAACTTCTGGAGGGAGTCTACTCAGGCTGAGGTTGACACTGACCCGCTTGATGGTTACGCAGATACTGACAGGGTAAACAACCTTTACCAGTATCAAATACTTAATGGCTCACTAGCCATCTTTGCTGACCAAGCTCAGTTTATAATTGACGGCTCCAAGCCAGTTACTAAGGCTAACCTGACCTTACAGCAGGTGACTGCCTACCCGAATAACGTGCATGCTCAGCCACAAGCTGGCGGGGAGAATATATTCTTTGCTTATGATGCTAGCGGGTTTACTGGTATCCGTGAGTTGTTCACCGATAACTACACAGACACTAAGAAAGCCTACCCAATCACTGACTATGTTAGTAAGTACATAGAAGGTCAATGCACACAGCTGCTGGCCTCCTCTAACTTCAACTCTATGATGGTTAGGACAGAAGTGAATCCATCTGTTGTATATGTTTATGATTGGCTATGGCAAGCTGAGCAGAAGGTACAGAGTGCGTGGCATAAATGGGTGTTTGATGGAAATATCTTGTTCTTATTCTACCTATCAGACTTTATGTACGTTGTATACAGTAAGGATAATAAAACTTATGTAGACTACCTACATATGGTTAATGACCCATCAGATTACGGCCTCGACTACTCTATTAAGCTTGATCACAAGGTTTCTGTAAATGCTGTATATAACCATTCACTTAAGAAGTACTCTATACAGCTACCTTACAGTAGGGATGATGTTATTCTTACAGTTGGTAACGGTGGGTATGAAACAATGCTTGGCTCAGCATTTGTTGCCACCCATGAGGGTAATGGGGTTTGGTCAACTACTGAAAGAATCTCTGATGAGAAAGACCTTACAGTAGTTTGTGGGGTTAAATACAAGTCTAGATATGTACCTACACAGCCTGTAGTTAAGGATGCCCGTGATAGGGTTATAGGTCTTGATAGTATTATCATGAGCAATATGTATGTTCATTATGAGCTTTCTGGGTTCTTGGAAATGCTAGTCAAACCTAAGCAGGGGCAAGAGCGTGTGTATAGATTCTTTGGTAGGTGGATGGGTTCTGCTAATAACTTAGTAGGCTCACCAATACTAGAGAATGGCACATACAGAGCGCCAATTAGACAGAGGGCAGAAGACCTTCAGATTACTATACAATCTGATAGTCACTATCCATTAACCATTCGTGACATAGAGATTGACGGTACATTCCATCAGAGAGGGCAAAGGATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2087741a909ac0014499805fadc92bee16357d88c94847fecdfb3edba5273c26
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8823
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50