Protein

View in Explore
Genbank accession
QIG76876.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MRNAINGLNPTNHFGSAMTSLASLDAMVGMEEDGEKPVQVTFPPGDSNRYMFFATRNKVPSGALVTAASGANYLCSKIIVNTPSYKTRTFRFHLSGFACTEGSNSPQETVVIGAIGTPGNSVVIDAMFIKVDGTFYQCTFNTGSNTVTIADQSNGAWTDALTIPDVAAESAIEIWTFYHTAVGEKVWPVYRIQKHRGERIWGATDHATLLTYKDTPDADSTASLDTNYATVNQPAYYGPDFMVAKGDWDGRPVALIFADSIGESRQEWSSSAGPRGEMGYLRWWLDRKAGIGRIPHMIIGIPGAGSVREYTGSGSTIATRRRDIIREIAAFNGSQWPFTVIINQMGQNDTNSTYSTWFNTNYRSLVTRIRAEYPGIKLVALPPLGRTVSTRTVTLASSGTTVTATIPSGINGLVTGQTVSISGATQTEYNGSFVITVVNNTTFTYQFAGSATSPATGSITASDLFLTAAFQSYSANNTWPNDGTDASGKWRLHDDIMAKTSACCDDAIDTYAAWASSVRGGCWPGMIELAYTTLAAPAGTDGVTTYNQITVADASMFRPEQLLDIYAFNGVQRVSQQTIASINGNTITYLGSSAVVMPVGYIVRPGPTPDGVHPYQYMVDQIAAKLPQSGKLKLMA
Physico‐chemical
properties
protein length:636 AA
molecular weight: 68402,90610 Da
isoelectric point:5,81369
aromaticity:0,09906
hydropathy:-0,13884

Domains

Domains [InterPro]
DC_1359
STR
1–266
DC_1359 SSF52266 IPR023366
DC_2170
RBD
435–636
DC_2170
QIG76876.1
1 636
Architecture
STR
STR
RBD
STR 1-266 | STR 292-461 | RBD 462-636
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG76876.1
1 636
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,7298
Central domain 11 225 216 0,6475
C-terminal 226 636 410 0,5297
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-225
C-terminal
226-636

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y1_11
[NCBI] 		2509770 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG76876.1 [NCBI]
Genbank nucleotide accession
MN988558 [NCBI]
CDS location
range 39737 -> 41647
strand +
CDS
ATGCGGAACGCCATCAACGGGTTGAACCCGACCAATCACTTCGGGTCGGCGATGACGTCGCTGGCGTCTCTCGATGCCATGGTGGGGATGGAGGAGGACGGCGAGAAGCCCGTCCAGGTGACCTTCCCGCCGGGGGACAGCAACCGCTACATGTTCTTCGCCACCAGGAACAAGGTACCGTCTGGGGCCTTGGTGACTGCCGCGTCTGGCGCGAACTACCTGTGCTCGAAGATCATCGTCAACACGCCCTCCTACAAGACCAGGACGTTCCGCTTCCACCTCTCTGGCTTTGCCTGCACCGAAGGCAGCAACTCGCCGCAGGAGACCGTGGTCATCGGAGCGATCGGCACTCCCGGCAACTCGGTCGTGATCGACGCCATGTTCATCAAGGTCGACGGCACCTTTTACCAATGCACCTTCAACACGGGGTCCAACACCGTCACCATCGCTGACCAGTCTAATGGGGCATGGACAGACGCCCTAACCATCCCCGACGTGGCGGCCGAGAGCGCCATCGAGATCTGGACCTTCTACCACACGGCAGTCGGTGAGAAGGTTTGGCCGGTCTATCGCATCCAGAAACATCGCGGCGAACGCATCTGGGGCGCTACCGACCACGCCACCCTACTCACTTACAAGGACACACCAGACGCCGACAGCACGGCCTCGCTCGATACCAACTACGCCACCGTCAACCAGCCGGCCTATTACGGGCCAGACTTTATGGTGGCCAAGGGCGATTGGGACGGCCGACCGGTTGCCCTGATCTTCGCGGACAGCATCGGCGAAAGCCGCCAGGAATGGTCCTCTTCTGCAGGACCTCGCGGCGAGATGGGTTATCTTCGTTGGTGGCTCGATCGCAAGGCAGGCATCGGCCGCATCCCCCACATGATCATCGGCATCCCCGGCGCTGGATCGGTGCGAGAGTACACCGGTTCGGGCTCCACGATCGCAACCCGCCGCCGCGACATCATCCGCGAGATCGCCGCCTTCAACGGTAGCCAGTGGCCGTTCACGGTCATCATCAACCAGATGGGTCAGAACGACACTAACTCGACGTATTCGACATGGTTCAATACCAACTACCGCAGCCTGGTCACCCGTATCCGTGCTGAGTACCCCGGCATCAAGCTGGTCGCACTCCCGCCGCTCGGCCGCACGGTATCGACCCGCACTGTCACCCTGGCCTCTTCCGGCACCACGGTCACCGCGACCATCCCCTCGGGCATCAACGGCCTCGTGACGGGCCAGACCGTCTCCATCTCCGGGGCGACCCAGACGGAATATAACGGCAGCTTCGTCATTACCGTCGTCAACAACACCACCTTCACCTACCAATTCGCAGGATCGGCAACCTCGCCGGCCACCGGTTCGATCACGGCAAGTGACCTGTTCCTGACCGCAGCCTTCCAGAGTTATTCGGCCAACAACACCTGGCCAAACGACGGCACGGATGCTTCCGGCAAATGGCGGCTGCATGACGACATCATGGCCAAGACCAGCGCTTGCTGCGACGACGCCATCGACACCTATGCGGCCTGGGCCTCCAGTGTCAGAGGTGGTTGCTGGCCGGGGATGATCGAGCTGGCCTACACGACCCTCGCGGCCCCCGCCGGCACCGATGGCGTGACCACCTACAATCAGATCACCGTCGCCGACGCCAGCATGTTCCGTCCAGAGCAGCTTCTCGACATTTACGCCTTCAACGGCGTCCAGCGCGTGAGCCAGCAGACGATCGCGTCTATCAACGGCAACACCATCACCTATCTCGGCAGCAGTGCAGTTGTCATGCCGGTGGGGTACATCGTTCGCCCCGGCCCGACCCCTGACGGTGTCCACCCCTACCAGTATATGGTCGACCAGATCGCGGCCAAGCTGCCGCAGTCGGGCAAGCTCAAACTAATGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2f2d24a1f2bcbaea939dc8c70c6f4324a7c3b8b32518f9bfddca73413c1c1201
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7154
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank