Protein

View in Explore

Genbank accession

YP_010647803.1 [GenBank]

Protein name

tail fiber protein and host specificity

RBP type

Evidence Phold

Probability 1,00

Evidence RBPdetect2

Probability 0,94

Protein sequence

MQIWIHDRSMRRVCALNNEIPGMLPYSNSQWHPYLEYSTSTFDFTIPKIVNGKLHDDIKYINDQMYVSFYYDNSYHVFYVSQLVENDFNFQVTCNNTNLELAMEVARPLADSGGPKTIEWYLQNLDLLGFAGLEIGFNEIPDRTRTITFESQNGTKLEQLHSLMNQFDAEFVFRTDLNRDGTLKKFVIDIYQRPDENHHGIGKVRGDVTLYYQSGLKGVQVTSDKTQLFNAGYFVGKDGLTLGSVVFEEKNELGQVEFYSFKDSPMVYAPLSADKYPSALGGANEIDRWTRKDFQTEYADINSLKAYALRTIKQYAYPLMTYTVSVQSSFLENYNDINLGDTVKIINNNFIDGLVLEARVSEMVISFDMPQNNSVVFTNFRKLDNKPSSELQQRIDEIVSKSLPYHVEIRTTNGTAFKNGVGRSTVKPVLKQGDKIVDATYRFVIDGTIKYSGMTYDMVASDITEPTTLTVAAWVDDKEVASEEVTFFNVSDGTQGEPGPKGADGQTPYFHTAWSYSADGKDRFTTIYPNLNLLDGTKDFSGDWQWLENWTNDGTYKGLTVKKRTYLWQGIFKTFTAPKDGTYTFSAYIKNSGSKTNVYRFVYINGKEYWSDSTTKALGNNFDWLRDTFTIKLKANDTVIARYELSDEGTLWTAGHKWEEGSVATPWMPSTNEVKTSDYPKYIGQYTNYNQVDSPNPQDYTWSLIRGNDGEQGPQGPKGERGPQGPQGPQGPRGDQGIPGPKGADGKTQYIHIAYADTVSGSGFSQTDTNKAYIGMYQDFNAEDSNNPQDYRWSKWKGSDGKDGIPGKAGADGRTPYVHFAYADSADGQTGFSLTQTGRKRYLGVLTNFIKEDSTNPADYTWNDTAGSISVGGRNLLVKTNQGITNWDWTMSNGDKSVEEVNIDGIRAVKLTKGTKTANTGGNYIQYQGLLRKLIRPNTQYTLSFDVKPSVDVSFSATLIRGNYQAELTDTVLMNKALANQWTKVSCVLTSKETLSGDLNQVVYLAGMPTTNGNWLIIKNIKLEEGNIPTPWTPAIEDIQEEIDSKADDVLTQAQLNKLNEMNSIVKAELAAKASLDTLDQWKQAYQDFVNANNANRAQAEKDLADASARVTKLENDLNDMSERWNFIDSYMTASNEGLVVGKTDNSSSMLFSPNGRISMFSAGHEVMYISQGVIHIENGIFSKTIQIGRYREEQDIINPDRNVIRYVGGS

Physico‐chemical properties

protein length:	1211 AA
molecular weight:	135934,55270 Da
isoelectric point:	5,09047
aromaticity:	0,11313
hydropathy:	-0,56763

Domains

Domains [InterPro]

DC_0002
STR
1–680

DC_0002 IPR008160 DC_0002

IPR010572
ENZ
141–382

IPR010572 IPR050149 G3DSA:2.60.120.260 Coil

IPR008983
RBD
569–659

IPR008983 G3DSA:1.20.5.320 IPR008979

IPR008983
RBD
574–645

IPR008983

DC_1328
STR
637–799

DC_1328

YP_010647803.1

1 1211

Architecture

STR

STR 1-1211

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0002	STR	DC_0002	1	680	Novel HMM	DC_0002	Central	Low	Positional only	166 proteins / 166 hits
IPR010572	ENZ	DC_0675	141	382	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
IPR050149	Unmapped	-	493	813	InterPro	Collagen superfamily	-	-	-	-
IPR008983	RBD	IPR008983	569	659	Merged direct domain	Tumour necrosis factor-like domain superfamily	C-terminal	Low	Positional only	19 proteins / 19 hits
IPR008983	RBD	IPR008983	574	645	Merged direct domain	Tumour necrosis factor-like domain superfamily	C-terminal	Low	Positional only	19 proteins / 19 hits
DC_1328	STR	DC_1328	637	799	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits
IPR008160	STR	DC_0536	707	747	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	719	772	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_0002	STR	DC_0002	795	1211	Novel HMM	DC_0002	Central	Low	Positional only	166 proteins / 166 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	854	1024	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
IPR008979	STR	IPR008979	882	1025	Merged direct domain	Galactose-binding-like domain superfamily	Central	Low	Positional only	24 proteins / 24 hits
Coil	Unmapped	-	1090	1124	Coils	Coil	-	-	-	-

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Streptococcus phage SW11 [NCBI]	2419630	No lineage information
Host	Streptococcus thermophilus [NCBI]	1308	cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Genbank protein accession

YP_010647803.1 [NCBI]

Genbank nucleotide accession

NC_070715.1 [NCBI]

CDS location

range 15751 -> 19386
strand +

CDS

ATGCAGATTTGGATTCATGACAGAAGCATGCGCAGAGTGTGTGCATTGAATAATGAAATCCCCGGAATGTTACCTTATTCGAATAGTCAATGGCACCCTTACCTTGAATACTCAACAAGTACATTTGATTTCACAATTCCTAAAATCGTAAATGGTAAGTTACACGATGATATCAAATATATCAATGACCAGATGTACGTGTCATTTTACTACGACAATTCCTACCACGTTTTTTATGTTTCTCAACTCGTTGAAAATGATTTTAATTTTCAAGTGACTTGTAATAATACTAACCTTGAATTGGCAATGGAAGTTGCACGACCACTTGCAGACAGTGGCGGTCCCAAAACCATTGAGTGGTATCTTCAAAACCTTGATTTACTTGGTTTTGCTGGTCTTGAAATTGGTTTCAATGAGATTCCTGATAGAACAAGAACTATCACGTTTGAATCACAAAATGGCACTAAACTAGAACAGCTTCATAGCTTGATGAACCAGTTTGATGCTGAGTTTGTTTTTCGTACCGATTTAAACCGAGATGGCACTTTGAAAAAGTTTGTCATTGACATCTACCAACGTCCTGACGAAAACCATCACGGTATTGGAAAGGTTCGAGGAGATGTAACTCTCTACTACCAAAGCGGATTGAAAGGCGTTCAAGTCACTAGTGATAAGACACAACTGTTTAACGCTGGGTATTTCGTTGGAAAAGACGGACTAACGCTCGGAAGCGTTGTATTTGAGGAAAAGAATGAGTTAGGACAAGTAGAGTTTTATTCTTTTAAAGACAGTCCGATGGTTTACGCGCCTTTATCAGCAGATAAGTATCCATCTGCATTGGGTGGTGCTAACGAAATAGATAGATGGACACGCAAGGACTTTCAAACAGAGTATGCAGACATCAATTCCCTCAAGGCTTATGCCTTGCGTACTATTAAGCAATATGCTTATCCTCTAATGACATATACCGTAAGTGTTCAATCTAGTTTCTTGGAAAACTACAATGACATCAATCTAGGTGATACGGTTAAGATTATTAATAATAATTTTATAGATGGTCTAGTACTTGAAGCTCGAGTTTCTGAAATGGTTATCAGCTTCGATATGCCACAAAATAATTCGGTCGTTTTTACTAATTTCAGAAAGTTGGATAATAAACCGTCTAGCGAATTACAACAACGTATCGATGAGATTGTTTCTAAGTCACTGCCATATCATGTTGAGATAAGGACAACGAACGGTACAGCGTTTAAAAATGGTGTTGGTCGTTCTACTGTTAAGCCAGTTTTGAAACAAGGCGATAAAATTGTTGATGCAACCTATCGATTTGTGATCGACGGTACTATTAAATATTCTGGTATGACTTACGATATGGTAGCGTCGGATATTACAGAACCAACAACATTGACGGTTGCTGCTTGGGTTGATGATAAAGAAGTAGCTTCAGAAGAAGTTACTTTTTTTAATGTATCAGACGGTACTCAAGGCGAACCTGGTCCTAAAGGTGCTGACGGACAAACGCCATATTTCCATACAGCATGGTCTTACAGTGCAGATGGTAAGGATAGATTCACTACAATTTATCCTAATTTGAATTTGCTGGATGGTACAAAAGACTTTAGTGGGGATTGGCAATGGTTAGAAAATTGGACAAACGATGGAACATATAAAGGCTTAACTGTTAAGAAACGAACTTATCTATGGCAAGGTATATTCAAAACATTTACTGCTCCAAAAGATGGAACATATACTTTTTCAGCATACATTAAAAACTCAGGAAGTAAAACAAATGTATACAGATTTGTTTATATAAATGGGAAAGAATATTGGTCAGACAGTACTACTAAGGCTTTAGGAAATAATTTTGATTGGCTAAGAGATACCTTCACTATAAAATTAAAAGCCAACGATACTGTCATTGCCAGATATGAATTATCGGATGAAGGTACTCTATGGACTGCCGGTCATAAATGGGAAGAAGGTTCCGTAGCCACTCCTTGGATGCCTTCAACAAATGAAGTCAAAACTTCTGATTATCCAAAATATATTGGTCAGTACACAAACTATAACCAAGTAGATAGTCCTAATCCTCAAGATTATACATGGAGCTTAATTCGAGGAAATGATGGAGAGCAAGGACCACAAGGACCTAAAGGTGAACGTGGTCCTCAAGGACCACAAGGTCCACAAGGTCCAAGAGGTGACCAAGGAATACCTGGTCCTAAAGGAGCAGATGGGAAGACGCAGTATATCCATATCGCTTATGCTGATACTGTTTCAGGTAGTGGCTTTAGTCAAACAGATACTAATAAAGCCTATATTGGTATGTACCAAGACTTCAATGCCGAAGATAGCAACAATCCACAAGACTATCGTTGGTCTAAATGGAAAGGTAGCGATGGTAAAGATGGGATTCCTGGTAAGGCTGGGGCGGACGGAAGAACACCTTACGTCCACTTCGCTTACGCAGATAGCGCCGATGGTCAAACTGGGTTCAGTTTAACTCAGACAGGACGTAAGCGTTATCTAGGTGTACTTACGAACTTCATCAAAGAAGACAGCACAAATCCAGCAGATTATACATGGAATGATACTGCTGGAAGTATTTCGGTTGGCGGTCGGAACTTACTTGTAAAAACCAATCAAGGTATTACTAATTGGGATTGGACGATGTCGAATGGTGACAAGAGCGTTGAAGAAGTCAATATCGATGGTATTCGTGCTGTTAAATTAACCAAAGGTACAAAAACAGCAAATACTGGTGGGAACTACATTCAATATCAAGGTTTGTTGCGTAAACTCATACGACCAAACACACAGTACACTCTTTCGTTTGATGTAAAACCAAGTGTTGATGTAAGTTTTTCAGCAACGCTAATAAGAGGCAACTACCAAGCTGAATTGACTGATACTGTCCTTATGAATAAAGCTTTGGCAAATCAATGGACTAAAGTATCATGTGTTCTGACAAGTAAAGAAACGTTATCAGGTGATTTAAATCAAGTTGTCTACTTGGCAGGTATGCCAACAACAAACGGTAATTGGTTAATAATCAAGAATATCAAGCTAGAAGAAGGTAATATACCTACTCCATGGACACCAGCCATCGAGGACATACAAGAAGAGATTGATTCCAAAGCCGATGATGTCCTTACGCAAGCACAACTCAACAAGCTGAATGAAATGAATTCTATTGTTAAAGCTGAACTTGCTGCTAAAGCCTCACTTGATACACTTGACCAATGGAAGCAAGCCTATCAAGATTTCGTTAACGCAAACAATGCCAATCGTGCACAAGCTGAAAAAGATTTAGCTGATGCAAGTGCTCGTGTAACCAAACTAGAAAACGACTTAAATGATATGTCAGAACGTTGGAATTTCATCGATAGCTACATGACTGCATCAAACGAGGGTCTTGTTGTTGGTAAAACTGATAATTCTAGCTCTATGCTGTTTAGTCCAAACGGTCGTATCTCAATGTTCTCAGCTGGACATGAGGTAATGTATATCTCACAAGGTGTCATTCACATCGAGAATGGTATTTTCTCGAAAACTATTCAAATTGGACGTTATCGTGAAGAACAAGATATTATTAACCCTGACAGAAATGTCATTCGTTATGTAGGAGGTAGTTAA

Genome Context

Tertiary structure

PDB ID

3813c21e52b7d580c565f10595dca56331004a8c4b8c354579bdd31b80ea9ca0

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7298

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Biodiversity of Streptococcus thermophilus Phages in Global Dairy Fermentations	Lavelle,K., Martinez,I., Neve,H., Lugli,G., Franz,C., Ventura,M., Bello,F., Sinderen,D. and Mahony,J.	2018	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature