Protein

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Genbank accession
WVM05040.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MRKTIHGQKGGGGSPRVPVEQPDDLQSIAKAKLLIALGEGEFAGELTAQNIFLDGTPLEDTEGNANFSGVTWDFRPGTQAQTYIQGLPSAENEINVGSTISSKTPWVHTFTNSQLSAIRVRLKWPSLFKQEDNGDLVGNEVKYAIDLQTDGGSWKTVIDSAVKGKTTSGYERAHRIDLPESTTSWSLRVRKVSNDANSSKIGDTVVLQSYTEVIDAKFTYPHTALLYIEFDSKQFNGSIPQITCKPKGRIIRIPSNYNPIDRTYTGVWDGSFKWAWSNNPAWVFYDIVISDRFGLGQRINQQQIDKWELYRIAQYCDQLVPDGKGGDGTEPRYVCDVYVQDRNEAYNVLRDFAAIFRGMTYWGGGQIVTLADMPRDIDYSYTRANVIDGKFIYSSSSSKEKYSTALVSYSDPQNGYADAMEPVFEPDLVSRFGFNQLEVTAIGCTRQSEANRKGRWGILTNNKDRMVTFSVGLDGNIPQPGYIIAVADELLSGKVTGGRVSAIDGRNITLDRVASAVSGDRLILNLPSGQSQARTIQTVSGKVITVTTEYSETLETECVWVVESEELYAQQYRVVSVTENESNQFTITAIQHDPSKYEHVDSGALIDERPISVIPPNNQQAPKNIVIDSYSIVSQGVSIETMRAQWPQVENAISYEAQWRRNEGNWVNMPRSSINSIEVPNVYSGRYLVRVRAINASEISSGWGYSEEKTLTGKMGNPPKPVNFRASPLVFGIKLDWGFGENTSDTLKTEIQYSKTNDGEGLMLLSDVPYPSKTYEMAGLSAGVAFYFRARLVDKTGNQSEWTEFIRGESEFDVGTILPELDGHFMSSEAGQQLSERLDWNAETALLLSNADSQLSRSVLMKHGQSQAGIRELWQVRATDNEAWAQEVKEIYSAVGDNTSAIKETQTSITKLDEAFGQRFTEIRTEMDKAQADIVSNSTAISNTNKAFAENKTQVQAKFDKQEGMIQEKMQATFEQSGDGVVTHSINITIVHNNVKYNAAGQVISAQVKNGKLESFFGYNANNFAWYNPANGKMELFMYAKDGQLFIRDLFIEDGSITNAKIGNVIQSNNYLNGRPSWIINKNGFAEFQNIKARGEIDATSGRLKNVVIEESCEILGKLNVENLEGNIISIHRDNIYLREIWNDGNIHTIFKVKQRSQYCTIWVDGTITADETIPINAIHKVENRAVIAYRAPGFPIERAMFSVFMDGKEVDFNSHIYPLVTGNVAGFYAANDITITIPPGNSIVEIGIRIPHIPGESNGVLIRGRVFLLPHSDEVILIN
Physico‐chemical
properties
protein length:1280 AA
molecular weight: 142419,71070 Da
isoelectric point:5,20261
aromaticity:0,09375
hydropathy:-0,38734

Domains

Domains [InterPro]
DC_0014
STR
1–1237
DC_0014
IPR053171
Unmapped
2–855
IPR053171 IPR015406
IPR055385
ATT
91–216
IPR055385 IPR032876 IPR003961
WVM05040.1
1 1280
Architecture
STR
ATT
STR
ATT
STR
STR 1-90 | ATT 91-216 | STR 217-340 | ATT 341-503 | STR 504-1237 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WVM05040.1
1 1280
Domain Start End Length (AA) Confidence
N-terminal 1 1125 1125 0,8882
Central domain 1126 1269 145 0,2375
C-terminal 1270 1280 10 0,9835
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-1125
Central
1126-1269
C-terminal
1270-1280

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_PvuS_Pm34
[NCBI] 		3116923 No lineage information
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WVM05040.1 [NCBI]
Genbank nucleotide accession
PP059946.1 [NCBI]
CDS location
range 493 -> 4335
strand -
CDS
ATGAGAAAAACAATTCACGGTCAAAAAGGGGGCGGTGGTAGTCCTCGTGTGCCTGTTGAGCAACCTGATGATTTGCAATCTATTGCTAAAGCAAAGTTACTCATTGCCTTGGGTGAGGGAGAATTTGCCGGAGAGTTAACGGCACAAAATATCTTTCTTGATGGTACGCCGTTAGAAGACACTGAAGGAAATGCAAATTTTAGTGGTGTTACGTGGGATTTTAGACCAGGCACGCAAGCACAGACTTATATTCAAGGATTACCTAGCGCTGAAAATGAGATCAATGTTGGTTCTACGATTTCGAGTAAAACACCGTGGGTTCACACATTTACCAATTCACAATTATCAGCTATTCGGGTTCGTCTAAAGTGGCCTTCATTATTCAAGCAAGAAGATAATGGGGATTTGGTGGGTAATGAAGTTAAATACGCCATTGATTTACAAACTGATGGTGGTAGTTGGAAAACCGTTATTGATAGTGCCGTAAAAGGAAAAACAACTTCAGGTTATGAGCGAGCTCATCGAATTGATTTACCTGAATCGACAACATCATGGTCACTACGTGTTAGAAAAGTCTCTAATGATGCTAATAGCAGTAAAATCGGTGATACGGTTGTTTTGCAAAGTTACACTGAAGTCATTGATGCTAAATTCACCTATCCTCATACAGCATTACTTTATATTGAATTCGACTCTAAACAATTCAACGGCTCTATTCCGCAAATAACGTGCAAACCGAAAGGGCGCATAATCCGAATACCCTCAAATTACAATCCTATTGATCGCACCTATACGGGCGTGTGGGATGGTTCCTTTAAATGGGCATGGAGCAATAATCCCGCATGGGTTTTCTACGATATTGTTATCTCCGATAGATTTGGTCTTGGACAACGAATAAATCAACAACAGATAGATAAATGGGAGTTATATCGTATAGCGCAGTATTGTGATCAATTAGTACCCGATGGAAAAGGTGGTGACGGCACAGAACCTCGTTATGTCTGTGATGTTTATGTGCAAGATAGAAATGAAGCGTATAACGTGTTACGTGACTTTGCGGCTATCTTTCGAGGAATGACCTATTGGGGTGGCGGTCAGATTGTGACATTAGCAGATATGCCTCGTGATATTGATTATAGCTATACCCGAGCCAATGTGATTGATGGAAAATTTATTTATTCAAGCAGTAGCAGTAAAGAAAAGTATTCTACGGCATTGGTTTCGTATTCAGATCCGCAAAATGGATATGCTGATGCAATGGAGCCAGTGTTTGAACCTGATTTAGTTTCTCGGTTTGGGTTTAATCAATTAGAAGTTACCGCGATTGGCTGTACTCGACAAAGTGAAGCAAACAGAAAAGGGCGCTGGGGAATACTGACAAACAATAAAGACAGAATGGTGACATTCTCTGTCGGGTTAGATGGGAACATTCCGCAACCTGGTTACATTATTGCTGTTGCTGATGAACTATTGTCAGGAAAAGTCACTGGTGGTCGAGTGAGTGCCATCGATGGCAGAAATATCACGTTAGATCGTGTTGCAAGTGCTGTGAGTGGTGATCGCTTAATTCTCAATCTTCCTTCAGGGCAATCGCAAGCAAGAACGATACAAACAGTATCAGGGAAGGTGATCACGGTTACAACGGAGTACAGTGAGACACTAGAGACAGAATGTGTTTGGGTTGTCGAGTCAGAAGAGCTGTATGCGCAACAATATCGCGTTGTTAGTGTTACAGAAAATGAGTCTAATCAATTTACTATTACAGCCATTCAGCATGATCCCAGTAAATATGAACATGTTGATTCTGGCGCATTGATTGATGAAAGGCCCATTAGTGTTATTCCTCCTAATAACCAGCAAGCCCCGAAAAATATTGTCATCGACTCTTACTCAATTGTAAGCCAAGGCGTTAGCATTGAAACGATGCGAGCACAGTGGCCACAAGTTGAAAATGCAATCTCTTATGAAGCGCAATGGCGTAGAAACGAAGGCAATTGGGTCAATATGCCTCGTAGCTCCATTAATTCTATTGAAGTTCCTAATGTTTATTCAGGTCGATATTTAGTTCGTGTTCGAGCCATTAATGCTTCTGAGATCTCAAGCGGATGGGGATATTCTGAAGAAAAAACGTTAACCGGAAAAATGGGTAATCCACCTAAACCAGTTAACTTTAGAGCGTCGCCATTAGTATTTGGCATTAAGTTAGATTGGGGGTTTGGTGAAAATACTAGTGATACGTTAAAAACTGAAATCCAGTACAGCAAAACGAATGACGGTGAAGGACTGATGCTGTTATCTGATGTTCCTTATCCATCTAAAACCTATGAAATGGCGGGTTTATCAGCTGGTGTAGCGTTTTATTTTAGGGCAAGGCTGGTGGATAAAACAGGTAATCAATCCGAGTGGACTGAGTTTATTCGGGGAGAATCTGAGTTTGATGTAGGTACGATATTGCCAGAGCTTGATGGACATTTCATGTCATCAGAAGCCGGCCAGCAACTTAGTGAACGCTTGGATTGGAATGCTGAGACAGCGCTTCTTCTTAGTAATGCTGATTCTCAACTATCACGTAGTGTGTTAATGAAACACGGTCAATCACAAGCGGGTATTCGCGAATTATGGCAAGTTCGTGCAACGGATAATGAAGCATGGGCGCAGGAAGTTAAAGAAATTTACTCCGCTGTTGGTGACAACACGTCTGCAATTAAAGAGACTCAAACTTCAATTACCAAGCTTGATGAGGCTTTTGGTCAGCGATTTACTGAAATTCGCACGGAAATGGATAAGGCTCAAGCAGATATTGTTTCAAACTCTACTGCCATCTCTAACACAAATAAGGCTTTTGCTGAAAACAAAACGCAAGTTCAAGCTAAGTTTGATAAACAAGAAGGCATGATTCAGGAGAAGATGCAAGCTACGTTTGAGCAGTCTGGCGACGGCGTTGTCACCCATTCCATTAATATCACGATTGTTCATAACAACGTGAAATACAATGCAGCAGGACAAGTAATTAGTGCTCAAGTTAAGAATGGAAAGCTCGAATCATTCTTTGGTTACAATGCGAATAACTTTGCTTGGTATAACCCTGCAAATGGCAAAATGGAATTATTCATGTATGCCAAAGATGGGCAATTGTTTATTCGAGATTTATTTATCGAAGATGGCTCGATTACAAATGCAAAAATAGGGAATGTTATTCAATCAAATAATTATTTAAATGGGAGACCGAGCTGGATAATTAATAAAAATGGGTTTGCTGAATTCCAGAATATAAAAGCGAGAGGGGAAATAGATGCAACTTCAGGTCGCTTAAAAAATGTTGTTATTGAAGAAAGTTGTGAAATTCTAGGAAAATTAAATGTTGAAAACTTAGAGGGGAATATAATCTCAATACATAGAGATAATATTTACCTAAGAGAGATTTGGAATGATGGGAATATTCACACTATATTCAAAGTTAAGCAACGAAGTCAATATTGTACGATATGGGTGGATGGAACAATAACGGCAGATGAAACAATTCCTATTAATGCAATTCATAAGGTGGAAAACCGCGCAGTCATTGCCTATCGAGCACCAGGATTCCCTATTGAAAGAGCTATGTTTTCTGTTTTTATGGACGGCAAGGAAGTTGATTTTAACTCTCATATATACCCACTTGTTACTGGCAATGTCGCTGGTTTTTATGCTGCAAACGATATAACAATCACAATTCCACCGGGTAACAGTATTGTGGAAATAGGTATTAGAATCCCACATATCCCTGGTGAATCTAATGGAGTATTAATTAGAGGTCGAGTGTTTTTACTACCACATAGTGATGAAGTTATTTTAATTAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0ab742354d98d3590178c447d2bb012926b9bbb23933e2af17dd7f573294c020
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7316
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50