Protein

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Genbank accession
XPK41557.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,74
TF
Evidence RBPdetect2
Probability 0,84
Protein sequence
MSRELMPKSGIMMPHVVVTRDAAVVGVSTVDGVAGAVNLTDKYLQKSDAEATYQTKAEGATKQYVTDAINPIMTNALFKDDPFVNNDTPIRSGGGNGVESVDMIKVTPENSIKLGSYASSVQGVEIHSAGRVQVVDQNDGGVETKYPVYSKRYRPEIEDLPFAAIGSYVKDSKGRTIGVTRTGINSDIKQLTQKVTFTQPVTVPDAVGDYDAVTLRQLRNSGGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVFSDGQLLNRADYPDLWAYAQLLSPIEDSLWLEDPYQRGRYSKGDGTTTFRVPDRNGIQSNSLPALYGRGDGGASAANGQVFDSAAPDIIGSVASYSAGTYAQLFGIATNAFESNNAFFPEGAGDTIPPGSGPVDGRYNTIEFKASRYNGIYGRSNSEIMGRNFVGVWTIRAHGGFTAANTSWSVINSDASEPPTGTPITGGLVSSKYVVGGVDKYRSSIQLLGANEVDLSTRITTINDRYAIGAATWDFKLDGKLLFNKSLTPNGTGYSPGNTYLTLANTWMTSPYSGYVGFVGGGVGVSGGGWRNFISLGSLIFPDTSHPTAVISQVYDYDLSTGNQPNGDIVRNTSFNAGSYDITFGNNSGTVNYLFSKSPVSDENKKHDITPISTEQALLNINKMKYSSFIYNYDEKNIVRRGFIAQQLEKIDSQYVRKYKDATGGETLSLDENVLLLDALAAIQELTKKVEVLEAKLAGK
Physico‐chemical
properties
protein length:729 AA
molecular weight: 78313,17960 Da
isoelectric point:5,29384
aromaticity:0,09602
hydropathy:-0,31015

Domains

Domains [InterPro]
DC_1514
STR
20–332
DC_1514 DC_1985
IPR030392
CHP
630–685
IPR030392 Coil
IPR030392
CHP
630–726
IPR030392
XPK41557.1
1 729
Architecture
STR
RBD
STR 20-332 | RBD 470-728 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK41557.1
1 729
Domain Start End Length (AA) Confidence
N-terminal 1 449 449 0,4631
Central domain 450 648 200 0,3385
C-terminal 649 729 80 0,9982
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-449
Central
450-648
C-terminal
649-729

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage JacquesWildberger_Bas92
[NCBI] 		3398418 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK41557.1 [NCBI]
Genbank nucleotide accession
PQ850610.1 [NCBI]
CDS location
range 10353 -> 12542
strand +
CDS
ATGTCTAGAGAATTAATGCCCAAATCTGGGATAATGATGCCTCATGTGGTAGTTACTAGAGATGCCGCAGTTGTGGGTGTGTCTACAGTTGATGGCGTGGCAGGTGCTGTTAATTTAACAGATAAATATCTACAAAAGTCTGATGCTGAAGCAACATATCAAACGAAAGCAGAAGGGGCTACTAAGCAATATGTAACCGATGCTATTAACCCTATTATGACAAATGCTCTGTTTAAAGATGACCCTTTTGTCAATAATGATACACCTATCCGCTCTGGTGGTGGTAATGGTGTTGAATCAGTGGATATGATTAAAGTTACTCCCGAGAACTCTATCAAACTAGGGAGTTATGCTTCTTCTGTTCAGGGGGTTGAGATTCACTCTGCTGGTCGTGTTCAGGTTGTTGATCAGAATGATGGTGGAGTAGAAACTAAGTATCCTGTTTATTCTAAACGTTATCGTCCTGAGATTGAGGATTTGCCTTTTGCTGCTATTGGTTCTTATGTTAAAGATTCCAAGGGTCGTACTATTGGGGTTACTCGTACAGGGATTAACTCTGATATCAAACAGCTTACTCAGAAGGTGACTTTCACTCAACCAGTTACTGTTCCTGATGCAGTTGGAGATTATGATGCGGTTACTTTGAGACAGCTTCGAAACAGTGGTGGTGGTTCTGGTGGTCCTACCATGAGTGGTATTTCTAACTTTGGTATTGGTGATTTCCACTTACGAGACAGTCGAGCTTTTATCCCAGCTTTTGAAGTGTTTTCTGATGGGCAGCTTCTAAATCGTGCTGATTATCCAGACCTGTGGGCTTATGCACAGCTGTTATCCCCTATTGAAGACTCTTTGTGGCTAGAAGACCCTTATCAAAGAGGCAGATACTCTAAGGGTGATGGCACAACTACTTTCCGTGTTCCAGACCGAAATGGTATTCAGTCTAATTCCCTTCCGGCTCTTTATGGACGAGGTGATGGTGGTGCTTCCGCAGCTAATGGTCAAGTGTTTGATTCTGCGGCCCCAGACATTATCGGCTCTGTTGCATCATACTCTGCTGGAACTTATGCCCAGCTTTTTGGAATAGCTACCAATGCATTTGAATCTAACAATGCCTTCTTTCCTGAAGGTGCAGGGGATACAATACCTCCGGGGTCTGGGCCAGTCGATGGTCGATATAACACTATTGAGTTTAAGGCTTCCAGATATAATGGAATTTACGGTCGCAGTAACTCAGAAATCATGGGTCGTAACTTTGTAGGTGTTTGGACTATTCGTGCGCATGGTGGTTTTACTGCTGCTAATACTTCTTGGTCAGTAATCAATAGTGATGCTTCAGAACCACCTACAGGTACTCCTATTACTGGTGGATTGGTTTCTTCTAAGTATGTAGTCGGAGGTGTTGATAAGTACCGTTCTTCCATACAACTACTAGGTGCTAACGAAGTTGATCTGTCTACGAGAATTACCACCATAAATGATAGATATGCAATTGGGGCAGCTACTTGGGATTTTAAACTGGATGGGAAACTACTTTTTAATAAATCACTTACCCCCAATGGGACAGGCTATTCTCCCGGAAACACCTATCTAACATTAGCCAACACTTGGATGACCTCTCCTTATAGTGGGTATGTTGGGTTTGTTGGGGGCGGCGTTGGTGTTTCTGGTGGCGGTTGGAGAAACTTCATCTCTTTAGGTTCTTTGATTTTCCCTGATACGAGTCATCCTACTGCTGTTATTTCTCAGGTTTATGATTATGACCTTTCTACAGGAAACCAACCTAATGGGGATATTGTCAGAAATACCTCTTTCAATGCTGGGAGTTATGATATCACTTTCGGTAACAACTCCGGTACAGTAAACTACCTCTTCAGTAAGTCCCCTGTGTCTGATGAGAATAAAAAGCATGATATCACCCCCATCAGTACAGAACAAGCCCTTCTTAATATAAACAAGATGAAATACAGCTCATTCATCTATAATTATGATGAGAAGAATATTGTTCGCAGAGGCTTTATTGCTCAGCAACTAGAGAAGATTGACAGTCAATATGTACGTAAGTACAAAGATGCTACTGGAGGTGAAACACTCTCTTTGGATGAGAACGTTCTGCTTTTGGATGCACTAGCTGCAATCCAAGAACTTACCAAAAAGGTTGAAGTTCTAGAAGCGAAGTTAGCAGGTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
768d5086cedb6c0c6736d70d9e9630132c0736aeed0ee5000ac6063c593e3316
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5768
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank