Protein

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Genbank accession
YP_001039832.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MSEPRVQFTNAGLAELISAKNTGIKAAITHIAAGDKSYTPLATQTALVREKQRVAIVDYEELSPTQLRMGAKFTGTLEYEVREIGFYLESGTLLAVYSVPNTLLTYKSANSSWIQKFTLDISPLPTDSVTVVVGTENINLMMTEELATMATAQIDNMTRHVELLFRFNELEKRV
Physico‐chemical
properties
protein length:174 AA
molecular weight: 19322,91850 Da
isoelectric point:5,25683
aromaticity:0,07471
hydropathy:-0,04655

Domains

Domains [InterPro]
DC_1466
ATT
1–172
DC_1466
IPR022225
ATT
8–102
IPR022225
YP_001039832.1
1 174
Architecture
ATT
ATT 1-172 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP882
[NCBI] 		2913982 Uroviricota > Caudoviricetes > Hapunavirus >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001039832.1 [NCBI]
Genbank nucleotide accession
NC_009016.1 [NCBI]
CDS location
range 11070 -> 11594
strand +
CDS
ATGAGCGAGCCTCGTGTCCAGTTCACCAATGCCGGCTTGGCTGAGCTGATAAGCGCCAAGAATACCGGCATCAAGGCCGCCATTACCCATATTGCGGCCGGTGACAAAAGCTATACGCCCCTGGCGACTCAGACCGCTCTGGTACGTGAGAAGCAACGGGTGGCAATTGTTGACTATGAAGAGCTGAGTCCGACCCAGCTGCGCATGGGGGCCAAGTTTACCGGCACCCTTGAGTATGAGGTTCGGGAGATCGGCTTTTACCTCGAGTCCGGCACCTTGCTGGCCGTGTACTCGGTACCGAACACCCTGCTCACGTATAAGTCGGCCAACAGCAGCTGGATCCAGAAGTTCACTCTGGATATCTCGCCGCTGCCAACTGACAGCGTGACCGTCGTGGTCGGTACGGAAAACATCAATCTGATGATGACCGAGGAACTGGCCACCATGGCCACGGCCCAGATTGACAACATGACCCGGCACGTTGAGCTGCTGTTCCGCTTCAACGAGCTGGAGAAGCGTGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
58f13f284c198f774e07659331f4077c41fc28d972475c76eea15d3e63178650
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8518
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a new plasmid-like prophage in a pandemic Vibrio parahaemolyticus O3:K6 strain Lan,S.F., Huang,C.H., Chang,C.H., Liao,W.C., Lin,I.H., Jian,W.N., Wu,Y.G., Chen,S.Y. and Wong,H.C. 2009 19286788 GenBank