Protein

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Genbank accession
YP_009820940.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,77
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MGVHLNPFTSQLDIVDSPSGDFSDLTLSAGTAAAPSISFTGDPNTGIYSPGTDQVALSTNGAEALRIDSDGNILVVDGNNLQIDEVRARDGDGLKLFDDGGAGIFVQDGGNVGIGTSAPSNGKLEINYSSDNEGIRVNDTRATPSANKRIMDLRYTGANGRTAGGTEMLLLYDNNASSNQPFIVAQNNTGEVFVLGQDGRVGIGTTSPGSILHVAAPNNSQLFLEATDTSPTTIILETDAGASERARINNKDGEITFDVGNTSEALRIDTSGKVGIGTSSPLRTLHVAGAGDTGLMLQTTNAVNDKEIWEIQTAGDASNHANLVFRSRTNAGTGGTEALRITNDGKVGIGTSSPDTALHLASTSPVLRFENPTTTSTTGTSMGKIEWETRDASAPGVIGYIDVVDSNSFGTAFDMQLATGVSGAATTKVTIKADGNVGINKSNPTGRLHVDGTFYVNNIGSGAGTNALRYNTSTGRITYDASSARYKDNIRDVDKGLSEVLQLKSRKFEYKDSGRTDIGFIAEEVITVVPELVTLDSEGLPEAVNYDRFVSVLTKALQEAVAKIEVLEQRLNDAGL
Physico‐chemical
properties
protein length:576 AA
molecular weight: 60285,60650 Da
isoelectric point:4,59773
aromaticity:0,05208
hydropathy:-0,28090

Domains

Domains [InterPro]
DC_0680
STR
2–190
DC_0680 DC_1042 DC_1367
DC_1815
STR
291–425
DC_1815 IPR030392
IPR030392
CHP
482–534
IPR030392 Coil
YP_009820940.1
1 576
Architecture
STR
STR
RBD
STR 2-190 | STR 224-425 | RBD 426-576
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009820940.1
1 576
Domain Start End Length (AA) Confidence
N-terminal 1 18 18 0,9591
Central domain 19 217 200 0,1237
C-terminal 218 576 358 0,9656
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-18
Central
19-217
C-terminal
218-576

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B28
[NCBI] 		2545435 Uroviricota > Caudoviricetes > Autographivirales > Qadamvirus > Qadamvirus SB28
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009820940.1 [NCBI]
Genbank nucleotide accession
NC_048171.1 [NCBI]
CDS location
range 3795 -> 5525
strand -
CDS
ATGGGTGTACATTTAAATCCTTTTACAAGTCAATTAGATATTGTAGATAGTCCATCTGGTGATTTTAGTGATTTAACACTTAGTGCTGGTACTGCAGCAGCACCTTCTATTTCTTTCACAGGCGACCCCAACACCGGCATCTACTCCCCTGGCACAGACCAAGTAGCCCTGAGCACTAATGGCGCTGAGGCACTGAGGATCGATTCTGATGGAAATATCTTAGTGGTTGATGGCAACAACCTTCAGATTGATGAAGTTCGCGCCAGGGACGGAGATGGTTTGAAGTTGTTTGATGACGGCGGTGCTGGCATCTTTGTACAAGACGGAGGGAACGTAGGCATAGGGACCAGTGCGCCTAGCAACGGAAAGCTGGAAATTAATTATAGTTCTGACAATGAGGGGATTAGGGTTAACGACACTAGAGCAACCCCCTCTGCCAACAAAAGAATCATGGATTTGCGCTATACAGGCGCAAACGGGAGGACTGCAGGCGGCACGGAAATGTTGCTTTTATACGATAACAACGCATCTTCAAACCAGCCTTTTATTGTTGCACAAAACAATACCGGAGAAGTTTTTGTACTTGGACAAGATGGGAGAGTAGGGATTGGCACTACGAGTCCTGGCAGTATTCTTCACGTCGCAGCTCCAAATAATTCACAACTTTTTCTTGAAGCTACTGATACAAGTCCAACCACAATAATCCTGGAAACTGATGCAGGAGCGTCAGAACGCGCCAGAATTAACAACAAAGATGGTGAAATAACTTTTGATGTAGGCAATACATCTGAAGCGTTGCGTATCGACACCTCGGGCAAAGTAGGCATAGGGACTAGTTCGCCTCTTCGAACTTTGCATGTTGCAGGAGCTGGCGACACTGGCTTAATGCTTCAAACGACTAATGCTGTTAACGATAAAGAAATTTGGGAAATTCAAACTGCTGGAGATGCAAGCAATCATGCCAACCTTGTTTTCCGTTCACGCACTAATGCAGGCACAGGCGGTACTGAAGCACTTCGCATTACCAACGACGGGAAAGTAGGCATAGGGACTTCTTCGCCTGATACGGCGCTTCATTTAGCTAGCACATCTCCAGTGCTTCGCTTTGAAAATCCCACTACTACCAGCACCACTGGTACGTCAATGGGCAAGATTGAGTGGGAGACGCGAGATGCTAGTGCCCCAGGTGTTATTGGCTATATCGATGTTGTTGACTCCAACAGCTTTGGCACCGCTTTTGATATGCAGCTTGCCACTGGCGTAAGCGGTGCTGCAACAACAAAGGTAACGATTAAAGCGGACGGCAACGTCGGTATTAACAAATCAAATCCCACTGGACGTTTGCACGTAGACGGCACCTTTTATGTGAACAATATAGGTAGTGGAGCAGGAACAAATGCTCTGCGATATAACACCAGCACTGGGCGAATTACCTACGATGCATCTTCGGCTCGATACAAAGATAACATTCGTGATGTAGACAAAGGACTAAGCGAGGTGCTTCAGCTCAAATCTCGCAAGTTTGAATACAAAGACAGTGGCAGAACGGACATTGGATTTATTGCCGAAGAAGTTATTACCGTTGTTCCCGAGTTAGTTACTCTTGATTCAGAAGGTTTGCCAGAAGCTGTTAATTATGATCGATTTGTGTCTGTTCTCACAAAGGCACTTCAGGAAGCGGTAGCCAAGATTGAAGTTCTTGAGCAGCGACTGAATGACGCTGGCCTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
54300e0920b9c3857e431122e14f826448293397570148ff1d97a1be1ca07921
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7760
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Genetic Analysis of a Novel Cyanophage S-LB68 from the Huang Bohai Liu,X. 2020-10 — GenBank