Protein

View in Explore
Genbank accession
YAF81078.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGYFQMTRNVEELFGGVITAPHQIPFTYKSNVGGETFLSLPFYPVTGVVTINGGMQVPLDNFEIEGNTLNLGRALSKGDVVYCLFDKILSPEDTAKGIRIYKFQAVGGETEFTPDFTSYGVQSLYIGGEYKTPEIEYSYNSTTGKVSLQTALTAGVWVVAEMSVKQPNISPAFDRSIQEIARSANVKDSEVIVSTDTISLLDGKKVVYDIAAQTSYGLPTIPDGSVISSVSGGKLTYNPGDVQVDLLPLPLESKVDNFVNLLSGPTGTNEIGFKLSAVGSVIRTATEKLIDIISVKDFGAKGDGITDDSDAIQSAILYAESLPQLLTHPYSPVTVWFPSGSYRHTKPIRITQPIILDGEGVEIKAMAPYTGITVTLQSGGTEEFKGQLYVVHGNKGADSSEGQLRWGFTISKGILLSANDTAMSNIYMERFVNARINSALQDSPTDGLVVGPSCWGLSTHALSIENFNRYAIHFLNKSAVNGAALDIRIWGNFKTGQAGILFDVGSACNGVTITGYIEKVDYGIIAARSTGAVLVSGVDFEQCTNRVLQASSDGSDGLTVGRITFKNCYLHSIGAAKIYAQHTVVSVEGCTLHAATADFETDTNSTGFIYAENNDYLVGYVGIVPGSNVDVKFNEALVRDNRVYQPVKSTSFADVPLVNLYQFKDSPNLLSSSFKFQSRWNNTDSKYEQESTWKVSDFYPSTSLQRECGITLTTVGSFAVKPVVDNLINVGLPTYRFSAVYAVNGTIQTSDARHKNIRSIEEKEIAVGAALAPLMIAFTWKNSDDNKTHFGCSAQKVIEVFEEYGLDAGEYSIVEYSEKADIYSVNYSQLLALCVAALANKLK
Physico‐chemical
properties
protein length:843 AA
molecular weight: 91300,76440 Da
isoelectric point:5,00259
aromaticity:0,09846
hydropathy:-0,04579

Domains

Domains [InterPro]
DC_0063
STR
1–836
DC_0063
G3DSA:3.30.2020.50
ATT
161–251
G3DSA:3.30.2020.50 IPR012334 IPR036388
IPR011050
STR
288–584
IPR011050 IPR030392
IPR024535
ENZ
292–376
IPR024535 IPR030392
YAF81078.1
1 843
Architecture
STR
ATT
STR
STR 1-160 | ATT 161-251 | STR 252-843
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAF81078.1
1 843
Domain Start End Length (AA) Confidence
N-terminal 1 308 308 0,9942
Central domain 309 655 348 0,9856
C-terminal 656 843 187 0,9657
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-308
Central
309-655
C-terminal
656-843

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CBDS-02
[NCBI] 		3459906 Viruses >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAF81078.1 [NCBI]
Genbank nucleotide accession
PX104388.1 [NCBI]
CDS location
range 145894 -> 148425
strand +
CDS
ATGGGGTATTTTCAAATGACCAGAAATGTAGAAGAATTATTCGGCGGCGTAATCACAGCTCCCCACCAGATTCCTTTCACGTATAAATCAAATGTCGGTGGAGAAACTTTCCTTTCCTTGCCGTTCTATCCTGTCACTGGCGTAGTCACAATCAACGGTGGTATGCAAGTTCCGTTAGACAACTTTGAAATCGAAGGAAATACGTTGAATCTCGGGCGCGCATTGTCCAAAGGCGATGTTGTGTATTGCTTATTCGATAAAATTCTTTCGCCAGAAGATACAGCCAAAGGTATCCGCATATACAAATTTCAGGCCGTAGGAGGTGAAACCGAGTTCACTCCTGATTTCACATCCTATGGTGTCCAATCTCTTTATATCGGTGGTGAGTACAAAACACCCGAAATTGAATATTCCTATAACAGCACGACAGGGAAAGTGTCTTTGCAAACTGCACTGACTGCAGGTGTTTGGGTAGTCGCTGAAATGTCTGTTAAACAACCGAATATCAGTCCGGCGTTTGACCGAAGTATTCAAGAAATCGCCCGTTCTGCTAATGTGAAAGACTCTGAAGTCATCGTTAGTACGGACACCATATCTTTATTGGATGGGAAGAAAGTTGTTTATGACATAGCGGCGCAAACCAGTTATGGCTTACCAACCATTCCTGATGGTTCTGTCATTTCTTCTGTATCTGGAGGGAAATTGACTTATAATCCAGGTGATGTGCAGGTTGATTTGTTGCCATTGCCATTAGAAAGCAAAGTTGATAATTTTGTGAATTTGCTTTCTGGTCCTACAGGAACAAATGAGATTGGATTTAAACTTTCAGCCGTCGGATCGGTTATTCGTACTGCCACTGAAAAATTGATAGATATTATTTCAGTAAAAGATTTTGGTGCGAAGGGGGATGGAATAACAGATGATAGTGATGCTATACAATCAGCAATTCTCTATGCTGAGTCACTCCCACAGTTACTTACACACCCTTATTCCCCTGTTACTGTATGGTTTCCTTCTGGTTCGTATCGACACACTAAACCCATTAGGATAACACAACCAATCATTTTGGACGGTGAGGGGGTTGAAATCAAAGCGATGGCTCCTTATACTGGAATCACTGTAACATTGCAATCTGGTGGCACGGAAGAATTTAAAGGTCAACTTTACGTAGTGCACGGCAATAAAGGAGCAGATTCTTCTGAAGGACAATTACGTTGGGGATTCACAATATCTAAAGGGATTTTGCTAAGTGCTAATGATACAGCAATGTCTAACATTTATATGGAACGGTTTGTAAATGCCAGAATTAATAGCGCATTACAAGATTCTCCGACTGATGGTTTGGTAGTTGGACCAAGCTGCTGGGGGCTTTCTACCCATGCTCTTAGTATCGAAAACTTTAACCGTTATGCAATTCACTTTTTGAATAAATCCGCTGTCAACGGTGCTGCACTTGATATTCGGATTTGGGGTAACTTTAAAACAGGTCAAGCAGGTATTCTATTTGATGTTGGTTCTGCTTGTAATGGTGTAACCATTACAGGATATATTGAAAAGGTCGACTACGGGATCATCGCTGCACGTTCTACGGGTGCTGTTCTTGTTAGTGGGGTTGACTTCGAGCAATGTACTAACCGTGTGTTACAAGCCAGCAGTGATGGGTCTGATGGGTTAACCGTTGGACGTATTACGTTTAAGAACTGTTACTTACACTCTATTGGTGCAGCTAAAATTTATGCTCAACACACTGTTGTTAGTGTTGAAGGGTGTACATTACATGCCGCAACAGCAGACTTTGAAACTGATACAAACAGTACTGGGTTTATTTATGCAGAGAATAATGATTATCTGGTTGGATATGTTGGCATAGTCCCCGGTTCTAATGTAGACGTTAAATTTAATGAGGCATTGGTACGAGATAATCGTGTGTACCAACCTGTTAAATCTACGTCCTTTGCAGATGTTCCATTGGTTAACTTATACCAGTTCAAAGATTCCCCTAACTTACTGTCTTCTTCTTTTAAATTCCAAAGTCGTTGGAATAACACGGATTCTAAGTATGAACAAGAATCTACCTGGAAAGTAAGTGATTTTTACCCGTCAACCAGTTTACAAAGAGAATGTGGTATAACCCTTACCACTGTTGGTTCTTTTGCGGTAAAACCTGTTGTAGATAACCTTATCAATGTTGGGTTGCCTACTTATAGGTTTTCTGCTGTGTATGCCGTAAATGGCACAATTCAAACATCGGATGCTCGCCATAAGAACATTCGTAGTATCGAAGAAAAAGAGATTGCTGTGGGTGCTGCATTGGCTCCATTGATGATTGCTTTTACTTGGAAGAATAGTGATGACAATAAAACGCACTTTGGTTGTTCAGCCCAGAAAGTGATAGAAGTTTTTGAAGAGTATGGCCTTGATGCAGGAGAATATAGTATTGTGGAATACTCTGAAAAGGCTGACATATATTCGGTCAATTATTCTCAATTACTTGCATTATGTGTGGCTGCTTTAGCCAATAAATTGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4265e6c53a209eb50b75c77587aad18616a808074ca7b0348de7b7fd0617d33a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7852
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A machine learning approach to predict strain-specific phage-host interactions Camejo,P.Y., Leon,L.E., Rojas,F., Ossa,A., Hurtado,R., Tichy,D., Pieringer,C., Pino,M., Mora-Uribe,P., Ulloa,S., Norambuena,R., Tobar-Calfucoy,E., Aguilera,M., Rojas-Martinez,V., Cifuentes,O., Sabag,A., Cifuentes,N., San Martin,D., Infante,C., Cifuentes,P. and Pieringer,H. — — GenBank