Protein

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Genbank accession
CAF32254.1 [GenBank]
Protein name
OMP1 protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRRLLPLIMILMAAPAANAGGLVHKMSSSVQLTVDSARTTATRLGSQYSVSGSNVNTTDGTTAGTVSTGTLTSGIYGPGNIAVTQATDGEAFSFSASYIQGDAVPSSAASVGAVGNFSSQTSYASGTAGDLAGTIATDGGISITAGGAGSTAVGQFVSEITVID
Physico‐chemical
properties
protein length:164 AA
molecular weight: 15977,45930 Da
isoelectric point:4,55590
aromaticity:0,04878
hydropathy:0,27439

Domains

Domains [InterPro]
IPR046285
STR
9–137
IPR046285
IPR046285
STR
20–137
IPR046285
CAF32254.1
1 164
Architecture
STR
STR 9-137 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CAF32254.1
1 164
Domain Start End Length (AA) Confidence
N-terminal 1 54 54 0,4469
Central domain 55 153 100 0,1735
C-terminal 154 164 10 0,4810
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-54
Central
55-153
C-terminal
154-164

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RSM2
[NCBI] 		264653 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CAF32254.1 [NCBI]
Genbank nucleotide accession
AJ628768 [NCBI]
CDS location
range 697 -> 1191
strand -
CDS
ATGAGAAGACTCCTCCCATTAATCATGATTTTGATGGCAGCACCTGCAGCAAATGCAGGAGGGCTGGTTCATAAGATGAGTTCAAGTGTCCAGTTAACTGTAGATAGTGCAAGAACCACCGCAACTCGCTTGGGTTCCCAATACAGCGTATCTGGATCGAACGTAAATACTACAGACGGAACCACAGCAGGAACCGTTTCTACTGGTACTTTAACCAGCGGAATCTATGGTCCTGGTAATATCGCCGTAACACAAGCAACTGACGGAGAAGCATTCTCCTTTAGTGCATCTTATATTCAAGGTGATGCAGTTCCATCTTCAGCTGCTTCTGTAGGTGCTGTTGGCAACTTCTCCAGTCAAACTTCTTATGCATCTGGAACTGCTGGTGACCTGGCAGGTACTATCGCTACTGACGGTGGTATTAGCATCACGGCAGGTGGAGCTGGATCTACTGCCGTCGGCCAATTCGTAAGCGAAATTACGGTAATCGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e1837c6c97a6ab4410d6c0e045fc0445ceb1f7f6f174774a3ece6b79c1bf5c07
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3290
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genetic organization of the psbAD region in phages infecting marine Synechococcus strains Millard,A., Clokie,M.R., Shub,D.A. and Mann,N.H. 2004 15263091 GenBank