Protein

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Genbank accession
ASZ71004.1 [GenBank]
Protein name
neck passage structure
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSLDNFKNRAIVWDTVNKGFPQPIQIMQGDVNARTLLIKIVDNGVEIDLTGHSLKLSYQYTNSINSGFVMIPPKDLAKGEFILVIPTEMTTTGVIEANLILLNESLEQVIVSKNLTFISDNSTVTDLAQEVNNKIDDFTKLLLENMPQVMRSELNDLHAQTESNKSNIELKANLADMTSLQSAMTDLKKEVEAFGISPENLVTIKSLLDAIASKASESEVVELKNSVKVLTSNISLMSNGDYSPKANQTDLDNLQEKAKNEFKERGVNVKWFGAKGDGVTDDTQAIQNAINKYDNVYIPDGTYLISTLSIDKKTFVHGAGQSITILKSKDESDKQMINLTLSAPRSMISDLTLQGGDSWDNVYSSKLGLVLSSEGRLVEQDTMIAITNVTINFFFDNFTLQEGHRGVACDQLYCGGAAHRNIVVLGTDNSLINCISAMSMDDGIYVYGSNNRLTSCKSFMAGMSKTAGAGARIQGSFISMANCEFQENYLCNLYLYNCNSSNIIGIILDGAGAHNDTGSLYYKDTEFSNVSIPICNLRIHNCSADNISATITNGRTVNKNSWTAAIGCYTLYPKLDTKNNINLTSINLDSKSADTYKTVDLPAYYWLNNSLTINGANTINDVNYELSHGFNVYSYNTPSSGLTITNNQDLNGNLAVSNTEYNLIINYPKNSKQLSISFDYDYDKNLGDNLFGVFDVMIACKNSDGTTKYYTSKFNYLSDLMFTISISDILPKTDYGEIMYVAGRFRFKNTSASTTNVAVKNLKTLIVTGL
Physico‐chemical
properties
protein length:770 AA
molecular weight: 84776,59070 Da
isoelectric point:4,93041
aromaticity:0,08182
hydropathy:-0,20156

Domains

Domains [InterPro]
IPR018913
ATT
8–147
IPR018913 DC_0775 IPR011050
G3DSA:2.60.40.3350
ATT
13–125
G3DSA:2.60.40.3350 IPR012334
IPR012334
STR
266–532
IPR012334
IPR024535
ENZ
267–456
IPR024535
ASZ71004.1
1 770
Architecture
ATT
STR
STR
ATT 8-147 | STR 148-219 | STR 264-654 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ASZ71004.1
1 770
Domain Start End Length (AA) Confidence
N-terminal 1 283 283 0,9948
Central domain 284 602 320 0,9892
C-terminal 603 770 167 0,9744
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-283
Central
284-602
C-terminal
603-770

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage 96603
[NCBI] 		2029676 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ASZ71004.1 [NCBI]
Genbank nucleotide accession
MF448572 [NCBI]
CDS location
range 7108 -> 9420
strand +
CDS
ATGAGTTTAGATAATTTTAAAAATAGAGCGATTGTATGGGATACGGTCAATAAAGGCTTCCCTCAACCAATACAAATAATGCAAGGCGACGTCAATGCAAGAACGTTATTGATTAAAATAGTTGATAATGGAGTTGAAATTGATTTAACTGGTCATTCATTAAAACTTTCATATCAATATACTAATAGCATTAATTCTGGTTTTGTTATGATTCCTCCTAAGGACTTAGCTAAGGGAGAATTTATTTTGGTGATTCCTACTGAAATGACAACAACTGGAGTTATCGAGGCAAATTTAATTCTTCTCAACGAAAGTTTAGAGCAAGTTATTGTCAGTAAGAATCTTACATTTATATCAGATAATTCTACAGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTACATGCTCAAACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCAAATTTAGCTGATATGACGAGCTTACAAAGTGCAATGACAGACCTTAAAAAAGAAGTAGAAGCATTTGGTATTAGTCCTGAAAATTTAGTTACTATAAAATCGCTATTAGACGCAATCGCAAGTAAAGCCAGTGAATCGGAAGTTGTTGAACTAAAAAATTCAGTAAAGGTTTTAACAAGTAATATTTCTCTGATGAGTAACGGAGATTACTCTCCTAAAGCCAATCAAACGGATTTAGACAACTTACAAGAAAAGGCAAAAAATGAGTTTAAAGAACGAGGAGTTAATGTCAAATGGTTTGGAGCTAAAGGAGACGGAGTAACTGATGATACTCAAGCAATACAAAATGCGATTAACAAATATGACAACGTCTATATTCCAGACGGAACATATTTAATCAGCACACTGTCAATTGACAAAAAGACATTTGTGCATGGAGCAGGGCAGAGCATTACAATTTTGAAATCAAAGGACGAATCAGACAAACAGATGATTAATCTTACACTGTCTGCACCTAGGTCTATGATCAGTGACTTAACTCTGCAAGGCGGCGACTCATGGGATAATGTGTACAGCAGCAAACTGGGACTGGTATTGAGTTCGGAAGGTAGGCTAGTAGAACAAGACACAATGATTGCTATCACAAATGTAACCATTAATTTCTTCTTTGATAATTTCACTCTGCAGGAAGGCCACCGTGGTGTTGCGTGTGATCAGCTATATTGTGGTGGTGCTGCGCACAGAAACATTGTTGTGCTCGGTACTGACAACTCGTTAATTAATTGTATATCTGCAATGAGCATGGATGACGGCATTTATGTATATGGTAGCAACAATCGATTAACTTCTTGTAAATCATTCATGGCTGGTATGAGCAAGACTGCTGGTGCTGGAGCTAGAATTCAAGGTTCGTTTATAAGCATGGCCAACTGTGAATTTCAAGAGAATTATCTATGCAATCTATACTTGTATAATTGCAACAGCAGCAACATTATTGGTATCATACTCGACGGTGCAGGAGCGCACAACGACACCGGAAGCCTTTATTACAAAGACACCGAATTCAGTAACGTTTCAATCCCAATTTGTAATTTGAGAATACATAACTGTAGTGCAGATAACATTTCAGCAACGATAACCAACGGAAGGACGGTCAATAAAAACTCGTGGACAGCAGCGATTGGGTGCTATACACTTTATCCAAAACTTGATACAAAGAATAATATTAATCTGACGTCAATTAATCTTGATTCAAAATCAGCTGACACATATAAAACAGTTGATCTACCGGCATATTATTGGTTAAACAACAGCTTGACTATTAATGGTGCCAATACTATCAATGATGTCAACTATGAACTTTCACACGGATTTAATGTCTATTCGTATAATACTCCAAGTTCTGGTTTAACCATTACAAATAACCAAGATCTAAATGGAAATCTGGCTGTCAGCAACACAGAGTATAACTTGATAATAAATTATCCGAAAAATAGTAAACAATTGTCTATAAGTTTTGATTATGATTATGACAAAAATCTCGGCGACAATCTTTTTGGTGTTTTTGACGTCATGATTGCTTGTAAAAACTCAGATGGCACTACTAAATACTATACAAGCAAGTTTAACTATTTATCCGATTTGATGTTTACAATATCTATCAGTGATATTCTGCCAAAGACTGATTATGGCGAAATAATGTACGTAGCGGGCCGGTTTCGATTCAAAAATACGAGTGCATCGACCACTAACGTTGCAGTTAAAAATCTAAAAACGTTAATTGTGACGGGGTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c0b4daff18e047383839c711c9da4ae33bad1588922887109263cfaa9e766c1c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6076
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genome analysis of lactococcal phages belonging to the virulent 936 group Oliveira,J. 2024 — GenBank