Protein

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Genbank accession
YP_239272.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,64
Protein sequence
MPPTEALSRPIRRPNSCGRWGLRISPSPMCSGATPSSPPSGRPWYSGLQGPTPSAFSRAPRLCPWRSGANMTVIRRRISKPGAVRRSLSRSVGGAIAGALSARGSGNFVPPPVISDLMIASMNGITPHNLQDSQNFDNHVARWIYTTGSGKLKSLALRFDAWFINATSAITNTSNPIPIFDASLEYNGVVVPVTFGNIRSKTLQPGDFDVLSDEIQVSAFGVTNIPRGSNVSLKIRYTFPGASANRMLIGLQRPESQGGQCRWFNAANTTVSSTDAPGPYTFTGTAPTARQGSYRPGLLGRYEGAFEPIWLFYGDSITMGTGDSDYTRNYGIGWPAEACRIASPNGGLSYGNMAIHGSSTAMSTFGEKIEAPLKYATHVHIGWGTNDFGTSAADPRPTSQPRLTAGVNSMKARPGSKVTNWYFGYLGPRTTTTDNYVTEENQSYLTANWGPSPCNVESWNSWLVTNFSPNGVNTWPSIRGVDPLKWRVNGTARYSNTDDAHPSTVGHLLMGQDAAAMMRANQGVSLA
Physico‐chemical
properties
protein length:527 AA
molecular weight: 56704,94670 Da
isoelectric point:9,74899
aromaticity:0,09488
hydropathy:-0,36831

Domains

Domains [InterPro]
DC_1250
STR
2–311
DC_1250 SSF52266
cd00229
ENZ
310–516
cd00229
IPR036514
STR
310–522
IPR036514
IPR013830
ENZ
312–438
IPR013830
YP_239272.1
1 527
Architecture
STR
STR 2-522 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xp15
[NCBI] 		322855 Uroviricota > Caudoviricetes > Alachuavirus >
Host Xanthomonas campestris pv. pelargonii
[NCBI] 		91612 Bacteria > Proteobacteria > Gammaproteobacteria > Xanthomonadales > Xanthomonadaceae > Xanthomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_239272.1 [NCBI]
Genbank nucleotide accession
NC_007024 [NCBI]
CDS location
range 2198 -> 3781
strand +
CDS
ATGCCGCCGACGGAGGCTCTCTCCCGGCCAATACGCAGGCCCAACTCTTGCGGAAGGTGGGGACTGCGTATATCCCCGAGCCCGATGTGTTCGGGGGCAACACCATCATCACCTCCGAGCGGCAGACCGTGGTACTCGGGGCTCCAGGGACCTACGCCATCCGCGTTCAGCCGAGCTCCAAGGCTGTGTCCGTGGAGGAGTGGCGCTAATATGACCGTCATCCGGAGGCGCATATCCAAGCCTGGCGCAGTCAGAAGGAGCTTGAGCCGTTCGGTGGGGGGCGCAATTGCCGGCGCCCTGAGTGCTCGAGGCTCGGGTAATTTCGTGCCGCCTCCGGTGATTAGCGATCTTATGATCGCCTCGATGAACGGCATTACGCCGCATAATCTTCAAGACAGTCAAAATTTCGATAACCATGTGGCCAGATGGATTTACACCACTGGGTCCGGAAAATTAAAATCCCTGGCTTTGCGTTTTGATGCCTGGTTCATCAACGCGACCAGCGCAATCACTAATACCTCCAATCCAATTCCTATCTTCGATGCGTCTCTGGAATACAACGGCGTAGTGGTCCCTGTAACATTCGGGAATATTCGATCCAAGACACTCCAGCCTGGCGACTTCGACGTTCTCAGCGATGAAATTCAGGTAAGCGCGTTTGGCGTAACGAATATCCCTCGTGGATCCAATGTATCCTTGAAGATTCGATATACGTTTCCAGGCGCCAGTGCCAATCGTATGCTCATTGGATTACAACGCCCCGAATCTCAAGGCGGCCAATGTCGATGGTTCAATGCGGCAAACACGACTGTATCTTCCACAGACGCGCCCGGACCGTATACTTTCACTGGAACGGCGCCGACTGCCCGGCAAGGCAGTTATCGTCCAGGCCTTTTAGGTCGATATGAGGGCGCTTTTGAGCCGATTTGGCTCTTTTACGGCGATTCAATCACGATGGGGACCGGTGACAGCGACTATACTCGCAACTATGGAATTGGCTGGCCAGCCGAGGCATGTCGAATTGCCAGCCCCAATGGCGGCCTATCATATGGAAACATGGCCATTCACGGTTCTTCCACCGCAATGTCGACCTTCGGTGAAAAAATTGAGGCTCCGCTAAAGTACGCGACTCATGTGCATATCGGATGGGGTACGAATGACTTCGGCACCAGCGCCGCGGATCCTCGTCCTACGTCTCAGCCACGCTTGACTGCTGGCGTGAATAGCATGAAAGCTCGACCTGGTTCGAAAGTAACGAACTGGTATTTCGGCTATTTGGGACCTCGTACTACCACGACAGACAACTACGTTACAGAAGAAAATCAGAGCTATCTCACTGCCAATTGGGGTCCTAGCCCTTGTAATGTGGAGAGTTGGAATAGTTGGCTCGTTACCAACTTCTCACCGAATGGCGTAAATACATGGCCCTCAATTCGAGGTGTAGACCCGTTGAAGTGGAGGGTAAATGGGACGGCTCGATATTCAAATACCGATGATGCACATCCGAGCACTGTAGGACATCTACTGATGGGCCAAGATGCCGCCGCTATGATGCGTGCTAATCAAGGAGTAAGTTTAGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
bd08ae9328e6c9e08837477ae4709822bc2d574973718f0401ccf09c7a05c439
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7391
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequencing of bacteriophage Xp15 from Xanthomonas campestris pv. pelargonii and identification of the lysis genes Ramadugu,C. and Gabriel,D.W. 2024 — GenBank