Protein

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Genbank accession
YP_009878216.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,74
Protein sequence
MTIKKFTFFSPNGTEFPVSANADAKLYMLLSEKDYSQFSLRHWETPINTALNRIYKNTSLLVGGRYFELYDEAVALNSNATNFVHANIDISNATNPVTMSVETSDNSNQVDINTGVGVLKKCIEVVTTNAMGVSAVTKPSGSSIIEKIYPVGAYYLSSQPTEPATLFGFGTWSRVKGRGLVGVDESDSALSSGGKQGGSTNPLSQHTITPSSGQFVVARGAGKWHWSSGGAPSNSYAMDTENGGITVGDNTNHNNWQPFEAAYIWKRIN
Physico‐chemical
properties
protein length:269 AA
molecular weight: 29026,90590 Da
isoelectric point:6,20559
aromaticity:0,10037
hydropathy:-0,31636

Domains

Domains [InterPro]
G3DSA:2.60.520.10
STR
1–139
G3DSA:2.60.520.10 IPR053827
SSF141658
STR
2–139
SSF141658 IPR053827
IPR048780
RBD
2–135
IPR048780
SSF141658
STR
2–150
SSF141658
YP_009878216.1
1 269
Architecture
STR
ATT
STR 1-143 | ATT 144-268 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage 56003
[NCBI] 		2029665 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009878216.1 [NCBI]
Genbank nucleotide accession
NC_049404 [NCBI]
CDS location
range 15303 -> 16112
strand +
CDS
ATGACAATTAAAAAATTCACGTTTTTCAGTCCAAACGGTACAGAATTTCCAGTTTCCGCAAATGCTGACGCAAAACTGTACATGTTACTTTCTGAAAAAGACTATTCGCAATTCTCACTAAGGCATTGGGAAACGCCTATAAATACAGCTCTCAATAGAATTTATAAAAACACAAGTTTATTAGTTGGTGGAAGATATTTTGAGCTTTATGATGAAGCAGTAGCCTTAAATTCAAATGCTACGAACTTTGTCCATGCAAATATAGACATTTCTAATGCTACAAATCCAGTGACGATGAGCGTAGAAACTTCTGATAACTCAAATCAAGTTGACATCAATACAGGTGTCGGAGTTCTTAAAAAGTGTATTGAAGTTGTTACAACAAATGCAATGGGAGTAAGTGCAGTCACAAAACCGTCAGGAAGCAGTATTATAGAAAAAATTTATCCAGTTGGTGCATATTACCTTAGTTCGCAACCAACTGAACCAGCTACATTGTTTGGATTTGGGACTTGGTCAAGAGTTAAAGGTCGTGGGTTAGTTGGGGTTGATGAATCAGATTCAGCTTTATCTAGCGGTGGCAAACAAGGTGGTTCAACAAATCCGTTGTCACAACACACAATAACTCCTTCAAGTGGACAGTTTGTTGTCGCTCGTGGGGCAGGAAAGTGGCACTGGTCTTCTGGTGGAGCTCCAAGTAATTCTTATGCTATGGATACAGAAAACGGCGGAATCACAGTTGGAGATAACACTAACCATAATAACTGGCAACCATTCGAGGCAGCTTATATTTGGAAACGTATAAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
f6c91a7fcc99ae4f311b18649f8d9d80b7cb404c23b5ff70573028224651bd47
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7813
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genome analysis of lactococcal phages belonging to the virulent 936 group Oliveira,J. 2024 — GenBank