Protein

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Genbank accession
YP_010582168.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,99
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSSGCGDVITLNDLQIAKKHQLFEAEVITGKAGGIAGGADIDYATNQVTLQTQKTLPAVLRDAGFTPAPFNFTTGGTLGVNDADKAVLWPIEDGGDGNYYAWRGSLPKVIPASSTPLTTGGISDAAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFTNNETVNFGGKVLTIDCKAKFIGDGNLVFTQLGNGSVIIGAFMESATTPWVIKPWTDDNQWITDPAAVVATLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKDQNISSVLEIRECTGVEVHRASGLMACFLFRGCHFCKMVDADNPSGGKDGVITFENLSGD
Physico‐chemical
properties
protein length:336 AA
molecular weight: 35903,96450 Da
isoelectric point:4,63729
aromaticity:0,09226
hydropathy:-0,09524

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
93–132
IPR040775 IPR012332
IPR015331
RBD
138–336
IPR015331
YP_010582168.1
1 336
Architecture
ATT
STR
ATT 65-135 | STR 136-336
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010582168.1
1 336
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9947
Central domain 156 325 171 0,9903
C-terminal 326 336 10 0,2034
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-325
C-terminal
326-336

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage St162
[NCBI] 		2024312 Uroviricota > Caudoviricetes > Sarkviridae > Cornellvirus > Cornellvirus St162
Host Salmonella enterica sv.
[NCBI] 		2846078 Duplornaviricota > Chrymotiviricetes > Ghabrivirales > Chrysoviridae > Alphachrysovirus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010582168.1 [NCBI]
Genbank nucleotide accession
NC_069146.1 [NCBI]
CDS location
range 40391 -> 41401
strand +
CDS
ATGTCAAGCGGTTGCGGCGATGTTATAACACTCAACGATTTGCAAATAGCTAAAAAGCATCAGCTTTTCGAAGCCGAAGTCATTACTGGTAAGGCTGGGGGCATTGCCGGTGGGGCGGACATTGACTATGCGACAAACCAAGTGACGTTACAGACGCAAAAGACGCTGCCAGCAGTCTTACGTGATGCCGGTTTTACCCCGGCACCTTTTAACTTCACAACCGGCGGGACCCTAGGGGTTAACGACGCGGATAAAGCGGTTCTTTGGCCTATAGAAGACGGCGGCGACGGCAACTATTACGCGTGGCGAGGCTCACTACCTAAAGTGATTCCCGCGTCGTCTACACCTCTCACTACTGGAGGAATTTCTGACGCAGCTTGGGTCGCCTTTGGAGACATCACATTTCGTGCGGAAGCAGATAAAAAATTTAAGTACTCGGTTAAGCTTTCTGACTTTACTACTTTACAGCAATTAGCCGATGCCGCTGTTGACAGCGTTCTTATCGACCGTGATTACACCTTTACCAATAACGAGACTGTTAACTTCGGAGGGAAAGTCTTAACCATTGACTGTAAAGCTAAGTTTATTGGTGATGGTAACTTGGTTTTCACACAATTGGGTAACGGTTCGGTAATAATCGGCGCTTTTATGGAGAGCGCTACGACCCCGTGGGTAATTAAGCCGTGGACTGACGATAATCAGTGGATAACAGACCCTGCCGCGGTAGTAGCAACGCTGAAACAATCAAAAACTGATGGCTATCAGCCAACAGTAAATGATTATGCTAAGTTCCCAGGCATAGAATCTCTCCTTCCACCTGAAGCTAAGGACCAAAATATTTCATCTGTCCTTGAAATACGGGAATGCACCGGCGTTGAGGTTCACCGGGCTAGCGGACTTATGGCGTGCTTCCTGTTTCGCGGCTGCCATTTCTGCAAGATGGTGGACGCCGATAACCCTAGTGGCGGTAAGGATGGGGTAATTACCTTCGAAAACTTGAGCGGGGACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
eac58cebbad1aba3ac50b3a88c99cffddbbfd648261a5f369310f78a54ec1d91
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7650
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank