Protein

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Genbank accession
YP_009283429.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MGFFAGKYSDGKTVLSLNTESGGDINRHYSPNANSIFHSDMPFVLVDGTYEAALGNAGNGFFVCQMPSDIINIKSNDPGRVILTAIEINGTHRAFLNGTQSQVGQFTAFFEDPPIGRAGAEVGLTSAFASGNSLAHGTYIYNSGLGHEESIARQGTGGTISQASGFNLYRPGGAYAGEAIGRAWTLAGFPAGASTVPIDGGNADYWHPNWQAPIGAAYRGHNWFYVCNSNIRGYVGKKGTVPANVNLLYQSPTYPDKVYICKGSTSNLAAQAAKKVYVQDGYNITPTKVIWYVLNLRYSNGNMGVSGNPFTGSDILITPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDTTARCEIVGSSNGSLWSPVDYGGAKSQISIYKFGAGKQWYVNSSNNTIGNEHGAVWSPSTVPLRLFPNNVASTYVGDDITPAYPGAGNYYMALATIGLGLPNANATVILTTEVIMGNINTAGGAIRTYGGTAWQVQGRRQHSYTEGDGIFHQILTLPPGYLVPYHSTTAYSYTQTWASRPDELTFRRNGYIYTIKNLGNGNAELGVIIHADEAAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:595 AA
molecular weight: 63739,31370 Da
isoelectric point:8,12123
aromaticity:0,11933
hydropathy:-0,19563

Domains

Domains [InterPro]
IPR059609
RBD
1–595
IPR059609
YP_009283429.1
1 595
Architecture
RBD
RBD 1-595
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009283429.1
1 595
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1334
Central domain 11 209 200 0,6460
C-terminal 210 595 385 0,8714
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-595

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage NR01
[NCBI] 		1647411 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus NR01
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009283429.1 [NCBI]
Genbank nucleotide accession
NC_031042 [NCBI]
CDS location
range 78371 -> 80158
strand -
CDS
ATGGGTTTTTTCGCTGGAAAATATAGCGATGGTAAGACCGTACTATCTTTAAATACTGAATCTGGTGGTGACATTAATCGTCACTATAGTCCAAATGCCAATAGTATTTTTCATAGTGATATGCCATTTGTCCTAGTTGATGGTACTTACGAGGCTGCATTAGGCAATGCTGGAAATGGGTTTTTTGTATGTCAGATGCCTTCTGACATAATAAATATTAAATCCAACGACCCAGGTAGAGTTATACTAACTGCCATTGAGATTAATGGTACTCATAGGGCTTTTCTTAATGGTACTCAATCTCAGGTTGGTCAATTCACTGCATTTTTTGAAGACCCACCTATTGGTAGGGCGGGTGCCGAAGTAGGTCTTACGTCAGCTTTTGCATCAGGTAACAGCTTAGCACATGGCACCTATATCTATAACTCTGGTTTAGGCCATGAAGAGTCAATTGCTAGACAGGGTACAGGTGGTACCATATCTCAAGCTTCTGGGTTTAATTTATATAGGCCGGGAGGAGCATATGCTGGTGAGGCTATAGGTAGGGCATGGACTTTAGCAGGATTTCCAGCAGGAGCGTCTACAGTACCTATAGATGGTGGTAATGCTGACTACTGGCACCCTAATTGGCAAGCTCCTATAGGGGCCGCCTATAGAGGACATAATTGGTTCTACGTTTGTAACTCTAATATACGAGGTTATGTAGGTAAAAAGGGCACAGTACCGGCTAATGTTAACTTATTGTATCAATCTCCTACTTACCCTGATAAGGTTTATATATGCAAAGGTTCAACATCTAATCTAGCGGCACAGGCCGCTAAGAAAGTGTATGTGCAGGATGGTTATAATATTACACCTACCAAAGTTATTTGGTATGTACTTAACCTAAGGTACTCTAATGGTAATATGGGCGTATCTGGTAATCCATTTACTGGATCAGACATACTTATAACTCCGTCTAATTTTACTATAAAAGGTGTTAGTTTACCAAATACTGGATATAAGTTTATCAACCAAAATGCTTTTGGTAACTTAGGCTATAGGCCAGATATGGAATACGTCGGAAATAACGCAGCGTACACTGGAGTCTTCGGGGATACTACTGCGCGCTGTGAAATTGTAGGATCTAGTAATGGATCTTTATGGTCTCCCGTAGACTATGGAGGGGCTAAGTCTCAAATTAGTATTTACAAGTTCGGAGCTGGTAAGCAATGGTATGTAAACTCAAGTAATAACACTATCGGTAATGAGCACGGAGCTGTGTGGAGTCCTAGTACTGTACCCTTAAGACTATTTCCTAATAATGTTGCTAGTACCTACGTTGGTGATGATATAACCCCAGCATATCCTGGAGCAGGAAACTATTATATGGCTCTAGCTACTATAGGACTAGGATTACCTAATGCTAACGCAACAGTAATATTAACTACTGAAGTTATTATGGGTAATATTAATACAGCTGGAGGAGCCATACGCACATACGGTGGTACTGCTTGGCAAGTACAAGGAAGAAGACAGCATAGTTACACGGAAGGTGATGGAATATTCCATCAAATATTAACCTTACCTCCGGGATATTTAGTCCCTTATCACTCCACTACTGCATACAGCTACACTCAAACTTGGGCAAGTAGACCTGATGAGTTAACATTTAGAAGAAACGGATATATTTATACTATTAAAAATCTAGGAAATGGTAATGCTGAATTGGGCGTAATTATTCACGCTGATGAGGCTGCAGCTATTTTCCTACCGAGATTAAGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f0f357ee38d31d6437697e44dd738915fabf3b5d2974fe47871b015f059600ec
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2474
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of S. Typhimurium Bacteriophage NR01 Lee,J.-H., Lee,H.Y. and Song,N.R. 2012-03-15 — GenBank