Protein

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Genbank accession
XRM23108.1 [GenBank]
Protein name
straight fiber tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MISNNAPAKMVLNSIMTGYTMAYVQHSIYTDYDVIGRSFWLKTGESVDRRDYTGIDTFFVMINNLTPSTSYEIQGAFYDSIIDSELLEAKIGINLSNETNFRTKEKPTIVAARSESEPVDVGVGAPIVIVETTGEASYCTIELKSTATEDSPWTKYYIGALGSTIKFGGVPIGDYKIRISGQVTMPDGVTVDSSGYYEFPNILTVAYNFVPPTAPINIVFKAARIADGKERYDVRIEWDWERGGGANVREFLVTYINSEEYAKTGWAKAQKINVGAARAATIISFPWKVEHTFKVSSIAWGPNKQDITESAPVTFILNEDTPLDNSFVNETGIDVNYAFIKGSMKDGEIWRQTFLIDAATGAINIGLLDEEGKAPISFDPINRVVNVDGKVITRDINAANFIMTNLSGKDNPAIYTQGKSWGDNNSGIWMGMDNTSAKAKLDIGNATQWIRYDGDVLRISSGVVIGTPNGDVDLGTGMQGKQTVFVYKLDKSLPAKPLEQDYPPPGWSKTPPNRTDMTQNIYATTGTLDPVTNKLLAGTSWSDVVQWSGTEGTIGHDGQRGPGMYSLGIPGLGGWDDGQANTFFQNNFGSPPVRYDVLTEFNSNAPQAAFTRQWNGSGWVSPAMVLHGDMIVNGTVTASKIVANNAFLSQIGVNVIYDRNAALSDNPEAYYRMKIDLAAGYIHIR
Physico‐chemical
properties
protein length:685 AA
molecular weight: 74907,21040 Da
isoelectric point:4,86959
aromaticity:0,10365
hydropathy:-0,24131

Domains

Domains [InterPro]
IPR057550
STR
10–97
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
103–197
IPR057551
XRM23108.1
1 685
Architecture
STR
STR
STR
STR
STR 10-97 | STR 103-197 | STR 211-335 | STR 350-664 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRM23108.1
1 685
Domain Start End Length (AA) Confidence
N-terminal 1 408 408 0,8573
Central domain 409 649 242 0,2489
C-terminal 650 685 35 0,9118
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-408
Central
409-649
C-terminal
650-685

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SaI_NFG_5581
[NCBI] 		3378340 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Infantis
[NCBI] 		595 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRM23108.1 [NCBI]
Genbank nucleotide accession
PQ488695 [NCBI]
CDS location
range 79403 -> 81460
strand -
CDS
ATGATTTCGAATAATGCACCAGCCAAAATGGTCTTAAATAGTATAATGACTGGATATACAATGGCATATGTCCAGCACTCTATATATACTGACTATGACGTTATTGGCAGATCTTTTTGGTTAAAGACAGGAGAAAGTGTAGATAGACGTGATTATACTGGTATAGATACTTTCTTCGTAATGATTAATAATCTGACCCCTTCAACCTCTTATGAGATTCAAGGGGCTTTCTACGACTCTATTATTGATTCTGAACTGTTAGAGGCTAAGATTGGTATCAATCTCTCTAATGAGACTAACTTTAGGACAAAAGAGAAGCCAACAATTGTTGCAGCAAGATCTGAATCAGAACCTGTGGATGTTGGGGTAGGTGCACCGATAGTTATCGTAGAAACAACTGGTGAAGCAAGCTACTGTACTATTGAGTTAAAAAGTACAGCTACTGAAGACAGTCCTTGGACTAAGTATTACATTGGTGCTTTAGGTTCTACTATTAAATTTGGTGGAGTTCCTATCGGAGATTACAAGATCAGAATATCTGGTCAAGTAACTATGCCTGATGGTGTTACAGTTGATTCTTCTGGGTATTATGAATTCCCTAATATTTTAACTGTAGCGTATAATTTTGTTCCTCCTACTGCACCTATCAATATTGTTTTTAAAGCTGCACGAATTGCTGATGGTAAAGAACGCTATGATGTTAGAATTGAGTGGGATTGGGAACGTGGTGGTGGTGCTAATGTTCGTGAGTTCTTGGTTACATATATAAATTCTGAAGAATACGCTAAGACTGGCTGGGCTAAAGCTCAAAAGATAAACGTTGGTGCTGCCAGGGCTGCAACAATTATATCATTCCCCTGGAAAGTTGAACATACCTTTAAGGTTTCGTCAATTGCCTGGGGACCAAATAAACAAGATATAACAGAATCAGCTCCTGTAACATTTATATTGAATGAAGATACTCCTCTAGACAACAGCTTTGTCAATGAGACTGGTATTGATGTTAACTATGCCTTTATTAAGGGCAGTATGAAAGATGGAGAAATCTGGAGACAGACATTCTTAATCGATGCAGCTACTGGTGCTATTAACATTGGTCTGCTAGATGAAGAGGGAAAAGCACCTATTTCTTTTGACCCTATAAACCGTGTTGTTAACGTTGATGGTAAAGTAATTACTAGAGATATTAATGCTGCGAACTTTATCATGACTAACTTATCTGGTAAGGATAATCCAGCAATTTACACTCAAGGTAAATCTTGGGGAGATAATAACTCCGGTATTTGGATGGGCATGGATAATACCTCTGCCAAAGCTAAGTTAGACATTGGTAATGCCACACAGTGGATTCGTTATGATGGTGATGTGCTACGTATTTCTAGTGGAGTAGTTATTGGAACACCAAATGGCGATGTAGATCTGGGTACTGGTATGCAAGGTAAGCAAACAGTATTTGTTTATAAACTTGATAAAAGTTTGCCAGCAAAGCCACTAGAACAAGATTATCCGCCTCCTGGTTGGTCAAAAACTCCACCTAATCGTACAGATATGACACAAAATATCTATGCGACTACGGGTACACTTGATCCAGTTACTAATAAACTTCTTGCAGGTACTAGCTGGTCTGATGTAGTTCAGTGGAGCGGTACTGAAGGTACTATAGGACATGATGGGCAACGTGGTCCTGGGATGTATTCCTTAGGTATTCCAGGTCTTGGTGGTTGGGATGATGGGCAAGCTAATACCTTCTTCCAGAATAACTTTGGTAGTCCACCAGTTAGATATGACGTATTGACTGAGTTTAATAGTAATGCTCCACAAGCCGCATTTACTCGTCAATGGAATGGTTCCGGTTGGGTTAGCCCAGCAATGGTATTACACGGCGATATGATAGTTAACGGCACGGTAACCGCTAGTAAGATTGTAGCAAATAATGCCTTCTTATCCCAGATAGGTGTTAACGTTATTTATGATAGAAACGCTGCATTATCTGATAATCCGGAAGCCTATTACAGAATGAAGATAGACCTAGCAGCTGGGTATATCCATATAAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6542da6c4d39897b3f2bb284e2919045e1b70eb4cc040670867a11bafd553049
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8020
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50