Protein

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Genbank accession
YP_010658487.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAELPLINAIPRFKGNENRVDKLVNGTALETWQTSEGVTLPTFAKFLADKDEEISEASDAAEAAAASAASAAASAAIVATYATRAAASAVNLSAYTEVRVNRWSATSHYAPAAYKKVVVEPAHTAKFQSLDGAWWELNDTIVDLRSFGAMQDNVADDSAALILATSFSNKLVIVSNLGSAIKVAGTIPVYGQILGIGNPNFALTVAGGVDRGFDLQSNSVLDGITITRGPTGSSDSGEYNNAFVVGRYVNQLGTLTRNVTVRNIKLIGIDAGVGRRSIAGIYGNVSDSLFENIEIEGWVSYGIMTHWGGVHDEEDPHSSTVTATWHPRRLTFRNIRMHSPQPDAALGVLYLSATHDILVDGLSSDGVRNPITIAPGDVGGVVAQGESVGRILQNILVRNVDINNYEGTGFVISGASGLRAGARWLGINEKMSIRLENITIKRGALSTSGRMIDARLVTNLTIDGYNLSHGSGADSAIYTPGLFIQACNNVKAKGRSHVPMAWEAVGSTNVEIDSQDVCLRTDYQTSAVGGRITAEAGAHSLGAALAVNDTTITLTALNFDIVAGSPIAVGGGYVVASAAAIEQATSIVIPIYPSPVSAASASAATVRKACKRYNLLGSTEGFYYGLHIVNTNSGYTEDVRVSRHFYRNGLHDIYARGTRHLKVDKSTFEACNQIDSASGNNIRFIDTAVGTVVTDCTFEDNLSGTTKCFHNIYLFGNSEGSIVKGNKFHRALTSAINYFLPTGVEMWADLGNNYFASTLAARITGTAIVRGSNVGMRVIGFATAIPTSGTWTKGDILFNEGAAASAGLGWICVTSGAPGTWKSIGTIAA
Physico‐chemical
properties
protein length:829 AA
molecular weight: 87416,12200 Da
isoelectric point:6,04178
aromaticity:0,07720
hydropathy:0,04632

Domains

Domains [InterPro]
DC_1322
ATT
1–184
DC_1322 DC_1462
IPR012334
STR
128–517
IPR012334
IPR011050
STR
133–489
IPR011050
IPR011050
STR
450–768
IPR011050
YP_010658487.1
1 829
Architecture
ATT
STR
ATT 1-184 | STR 185-829
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010658487.1
1 829
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9878
Central domain 155 769 616 0,9900
C-terminal 770 829 59 0,9635
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-769
C-terminal
770-829

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_X2_28B
[NCBI] 		2836086 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010658487.1 [NCBI]
Genbank nucleotide accession
NC_070857.1 [NCBI]
CDS location
range 62016 -> 64505
strand -
CDS
ATGGCTGAACTTCCCCTTATCAATGCTATTCCTCGTTTTAAGGGGAATGAAAATCGAGTTGATAAACTTGTTAATGGTACAGCATTGGAGACTTGGCAAACGAGTGAGGGGGTAACACTCCCTACCTTTGCTAAGTTTCTTGCTGATAAAGATGAAGAAATTAGTGAGGCATCTGATGCTGCTGAAGCTGCGGCAGCGTCTGCCGCTTCTGCTGCTGCCAGTGCTGCAATAGTTGCCACTTATGCAACTCGTGCTGCTGCTTCTGCTGTAAATCTTTCAGCTTACACTGAGGTACGTGTTAATCGTTGGTCTGCTACCTCTCATTATGCTCCAGCAGCATATAAGAAGGTTGTTGTTGAACCTGCTCATACAGCTAAATTTCAAAGCTTGGATGGGGCATGGTGGGAACTGAATGATACCATTGTGGATCTTAGATCCTTTGGTGCTATGCAGGATAATGTTGCAGACGACAGTGCTGCACTCATCCTTGCTACCTCATTCAGCAATAAACTAGTGATTGTTTCCAACCTTGGCTCTGCAATCAAGGTAGCTGGAACAATTCCAGTCTATGGACAGATCCTTGGTATTGGAAATCCTAACTTTGCTCTCACTGTAGCTGGTGGTGTAGATCGAGGTTTTGACCTTCAATCAAACTCCGTTCTTGATGGGATCACGATTACTCGTGGACCCACAGGAAGTTCTGATTCTGGCGAATATAATAACGCCTTTGTTGTTGGTCGTTATGTGAACCAGCTAGGGACTCTCACCCGTAATGTTACTGTTCGCAACATCAAACTTATTGGTATTGATGCTGGTGTAGGTCGCCGTAGCATTGCTGGTATTTATGGTAATGTTAGCGATAGCCTCTTTGAGAACATTGAGATTGAGGGTTGGGTATCCTACGGAATCATGACCCATTGGGGTGGTGTTCATGATGAGGAGGATCCACATTCCTCTACAGTTACTGCAACATGGCACCCACGTCGTTTGACGTTCCGCAACATTCGTATGCACAGTCCACAGCCTGATGCTGCTCTAGGCGTACTCTATCTTTCTGCTACCCATGACATCCTAGTCGATGGGCTGTCCTCGGATGGAGTTCGAAACCCAATCACCATTGCTCCAGGTGACGTTGGTGGTGTTGTTGCTCAAGGTGAGAGTGTAGGACGTATCCTTCAGAACATCCTGGTTCGTAATGTCGATATCAATAATTACGAGGGAACAGGATTTGTAATCTCTGGTGCTTCTGGTTTGCGAGCTGGTGCTCGTTGGCTTGGTATCAATGAGAAGATGTCCATTCGTCTTGAGAATATCACCATCAAGCGTGGTGCTCTCAGTACATCAGGACGAATGATTGATGCTCGTTTGGTCACCAATCTGACCATTGATGGGTATAATTTAAGCCATGGTTCTGGTGCAGATTCTGCTATCTATACCCCAGGTTTGTTCATTCAAGCTTGTAACAATGTGAAAGCTAAAGGCAGATCCCATGTTCCTATGGCTTGGGAAGCTGTGGGTTCTACAAATGTAGAGATTGATTCTCAAGACGTGTGCTTGCGTACTGATTATCAAACCTCTGCTGTAGGTGGTCGTATTACTGCTGAAGCTGGTGCTCATTCTCTAGGTGCAGCACTCGCGGTAAACGATACAACAATCACCCTTACTGCTTTGAATTTTGATATTGTGGCAGGATCACCAATTGCTGTTGGTGGAGGGTATGTCGTTGCATCTGCTGCTGCCATTGAGCAGGCAACTTCAATTGTGATCCCGATTTACCCAAGCCCGGTATCTGCTGCCAGTGCTTCTGCTGCTACAGTACGAAAGGCATGTAAAAGGTATAACCTTCTTGGTTCCACTGAAGGATTCTATTACGGTCTACATATCGTCAATACCAACAGTGGTTACACAGAAGATGTCCGAGTAAGTAGACATTTCTACCGCAATGGTCTTCATGACATTTATGCTCGTGGTACACGTCACCTCAAAGTAGATAAAAGCACTTTTGAAGCTTGTAACCAGATTGACAGTGCATCAGGTAATAACATCCGCTTCATTGATACTGCTGTCGGTACAGTGGTTACTGATTGTACCTTTGAAGATAACCTCTCTGGTACAACAAAATGTTTCCATAACATTTACTTGTTTGGGAACTCTGAAGGATCCATCGTTAAGGGTAATAAATTCCACAGAGCTTTGACTTCAGCTATTAACTATTTCCTCCCAACAGGCGTGGAAATGTGGGCTGATCTAGGCAACAACTATTTTGCCTCTACTCTTGCTGCCCGTATAACCGGAACAGCTATTGTCAGAGGATCTAATGTTGGTATGCGGGTAATTGGTTTTGCAACAGCAATTCCAACATCCGGTACATGGACTAAGGGTGACATTCTCTTCAATGAAGGTGCTGCTGCTAGTGCTGGATTGGGATGGATCTGTGTGACTTCAGGTGCTCCAGGTACTTGGAAGTCTATAGGAACAATTGCTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
beca16f9199351e6bdeedb8191ec864182ab2accebaeec550d2207d5e10fe38f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7761
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Hidden Diversity and Expansion of Phages in the Symbiotic Bacteria Rhizobium Gonzalez,V., Santamaria,R.I., Bustos,P., Cauwenberghe,J. and Juarez,S. 2017-09-25 — GenBank