Protein

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UniProt accession

F8J173 [UniProt]

Protein name

Glycerophosphoryl diester phosphodiesterase

RBP type

TSP

Evidence RBPdetect

Probability 0,90

Protein sequence

MIDPEVKLLMLKGDKGDGLSDDDMHKVESLIDSNVDEAKGSLSKALSAQLEVARIDDMNQTKSFVTSSVVDAKEDINRTVNARIAGARFIPKGFANADDLKKAYPKGQDGIFVVADTGHMWLFVNGAWKDCGVYQTPVQKNQTFTFQPSKDGFPNYDTATHKLDFRCITDSAQVTTPSGDAYRIPQYTVVDVNWEFTTGVIIFDTNTLSVISQSPYIPINANQYVLASYRRYPAEGDRLTWNGVLAQSLLINGETYMEQNVQFVPSKDGLPYYDSKRKIINFNCLTDQAYVSYQNRNYTLPHNATVALDFSRVTSFDILIDMKTGEVSTNDKYRLLTPNMDKVSFATVRLLNNGKVAIEGIKLLDEVSPKNSTGILPIAHRGLNSIAPEESLEAYSLAVRSGYKDIECDIYFTEDGIPVLHHDATINSIARNSDGTELTQPVKIGERMLVELNAYDYGIYKSEIFKGLNICTFEDIIKFARRTGATVHAELKQQYTDEQCQVLLDIVSKYRMANKVGWQAFDHSSLGYIASHDENAQLELLAGSITDDLIAEGKKRLNGKRKVVLSVGQGVTQRLVDQAHSEGFDVYVWTVDDIDGAKKLINMGVDGIMTNGHIDLPNLLSSDYDLQVSNSPAVDLVTNLTWYKNTYINGKGYIYNLLDGMKDGEERTFAPASGENWFSAIVNFKKNTYTLSFAAKSTVNTDNLTTLMRHVEMGDNNYNCVTSVNGTPVNSISWGDNDLKVSDSYTRYSVTYTANPDNKPFQIGFRTSSSTGTVSIKNIRLTVGTETSWGATVCMMSYLDANQGETYYARQLEEGAWLNAPMVVTNDNLDAIPSTVITDGENHTVKITIPSGGTKLFLNSNETLVPMVFKQSASSGI

Physico‐chemical properties

protein length:	877 AA
molecular weight:	97183,99720 Da
isoelectric point:	5,06489
aromaticity:	0,09122
hydropathy:	-0,31368

Domains

Domains [InterPro]

DC_1932
STR
17–549

DC_1932 DC_1520 G3DSA:2.60.120.260 DC_1292

IPR017946
STR
367–620

IPR017946 IPR008979

PTHR46211
Unmapped
370–612

PTHR46211

IPR030395
ENZ
375–620

IPR030395

IPR017946
STR
376–611

IPR017946

cd08556
ENZ
378–611

cd08556

IPR030395
ENZ
380–611

IPR030395

PS50007
ENZ
384–428

PS50007

F8J173

1 877

Architecture

STR

RBD

STR 17-807 | RBD 811-877

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1932	STR	DC_1932	17	549	Novel HMM	DC_1932	Central	Low	Positional only	18 proteins / 18 hits
IPR017946	STR	IPR017946	367	620	Merged direct domain	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Central	Low	Positional only	31 proteins / 31 hits
PTHR46211	Unmapped	-	370	612	PANTHER	GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE	-	-	-	-
IPR030395	ENZ	DC_0002	375	620	InterPro cluster	Glycerophosphodiester phosphodiesterase domain	Central	High	Text match	63 proteins / 165 hits
IPR017946	STR	IPR017946	376	611	Merged direct domain	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Central	Low	Positional only	31 proteins / 31 hits
cd08556	ENZ	DC_0002	378	611	InterPro cluster	GDPD	Central	High	Text match	63 proteins / 165 hits
IPR030395	ENZ	DC_0002	380	611	InterPro cluster	Glycerophosphodiester phosphodiesterase domain	Central	High	Text match	63 proteins / 165 hits
PS50007	ENZ	DC_0217	384	428	InterPro cluster	Phosphatidylinositol-specific phospholipase X-box domain profile.	Central	High	Text match	10 proteins / 10 hits
DC_1520	STR	DC_1520	615	667	Novel HMM	DC_1520	Central	Low	Positional only	6 proteins / 6 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	668	807	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
IPR008979	STR	IPR008979	671	782	Merged direct domain	Galactose-binding-like domain superfamily	Central	Low	Positional only	24 proteins / 24 hits
DC_1292	RBD	DC_1292	811	877	Novel HMM	DC_1292	C-terminal	Low	Positional only	6 proteins / 6 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

F8J173

1 877

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	369	369	0,9511
Central domain	370	678	310	0,8062
C-terminal	679	877	198	0,2218

Note: Constraints were applied during segmentation.
Fixed 10 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-369

Central
370-678

C-terminal
679-877

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Lactobacillus phage c5 [NCBI]	2892341	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Lactobacillus delbrueckii ATCC 11842 [NCBI]	1585	Bacillota > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus > Lactobacillus delbrueckii

Coding sequence (CDS)

No CDS data available.

Genome Context

Gene Ontology

	Description	Category	Evidence (source)
GO:0008081	phosphoric diester hydrolase activity	Molecular Function	IEA:InterPro (UniProt)
GO:0006629	lipid metabolic process	Biological Process	IEA:InterPro (UniProt)

Tertiary structure

PDB ID

4ca4744e3a6f4f2feead334d510d28d28e6f1eee8e613d11c398b084f1529c94

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3085

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
	—	—	21465086	PubMed

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Gene Ontology

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature