Protein

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Genbank accession
YP_009102963.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTRNVESIFGAVVTAPHQIPYTYTATGGETFISLPFYPVTGFVTINGGVQVPVDNYEIDGNTINLGRTLEPEDVVYCLFDKILSPEDYADGIRIYKFQAVGTETSFIPDFAAYGVQTLYIDGKFQVPDINYSYSSTTGAVSFLTGSPAADVWVVAEMSVKQPNISPLFDRTIQEIARTYNIGESQVVMSTNLSTSLDTKTHIYDVDQQKVWGIPSGYLPSGAKVVELSGNTLTYDVSGSQATVTLVPAFNGSEDLAQRVKPALFTKLKSVTFTTGAIVNQNEALLHSDGMYYVNTGTSFPVIVAPASAPTASWVAVGLLNRYDISDSRAWYAPSSTVDNTVPLKLFMSLMTSLKTKATMVGDVLVSSCIEFDTDLDQSSARIFVSPDSDTTVSGGGGAVFRCKDVDTVVLTGQSFATSNIGQLSHVQLSGAAFSNTTVGVEGEGDTNRAYFRGTFDTYTQAADLYVMDGGTTGNHPETEALFKFNDTAKFTIRPLRAGRLIRGGVYVLSAPLSGSRSLRTCIAIERNNTCLMGGYFDPQSTGLVAESYTQLSYVTDCSVLGVSVPNEAVSSNYAILCYATNRIYVQHCHAPSGWALVDGNFMRNTVVEDSSGATIGCHAMAWNFTVNRCTLTPIIVNSKYQGGISLTGGGLLKVKDIVYTYMGGDRSLDHPVSTRGDYGQSWEGDIDISGVVIRYAAIPTSGQGLAIVYANGADFGATDLTRTNVYLGGKRLSIQNVEIQILNASWTASQIVINPAWFQTTYTQTVQYPLEYVVKDFEVTLSGLPTNVFTMDPRFPLLVSDPSAVQSTCRIHFSNVRWPNNSIMFVGAAASTTYRVTALLTIEEGKSPLYINLLALPANSVATIRRCTIGNLALGNANSAGEYRLERNVVTGTNFGGSGGGADKAYYYENHINTTNAVAVGSVAKYCHGNTAIFGGSITGRSIDEWYSYRDPAVFRTA
Physico‐chemical
properties
protein length:958 AA
molecular weight: 103185,66120 Da
isoelectric point:5,08444
aromaticity:0,10230
hydropathy:0,00136

Domains

Domains [InterPro]
DC_0063
STR
1–815
DC_0063
G3DSA:3.30.2020.50
ATT
157–247
G3DSA:3.30.2020.50
YP_009102963.1
1 958
Architecture
STR
ATT
STR
STR 1-156 | ATT 157-247 | STR 248-815 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009102963.1
1 958
Domain Start End Length (AA) Confidence
N-terminal 1 339 339 0,9700
Central domain 340 947 609 0,9913
C-terminal 948 958 10 0,3193
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-339
Central
340-947
C-terminal
948-958

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage RC-2014
[NCBI] 		1477406 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Limestonevirus
Host Dickeya
[NCBI] 		204037 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae >
Host Dickeya sp.
[NCBI] 		1914291 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009102963.1 [NCBI]
Genbank nucleotide accession
NC_025452.1 [NCBI]
CDS location
range 95406 -> 98282
strand -
CDS
ATGACCAGAAACGTCGAGAGCATCTTTGGGGCGGTTGTAACAGCACCGCACCAGATTCCATACACTTACACCGCAACGGGTGGAGAGACGTTTATCTCCCTCCCGTTCTATCCCGTTACGGGCTTTGTTACAATCAACGGTGGTGTCCAAGTCCCTGTAGACAACTATGAAATCGATGGGAACACGATCAATCTTGGTCGGACACTGGAACCCGAAGACGTTGTGTACTGCCTGTTTGACAAGATTCTGTCTCCTGAAGATTATGCAGACGGGATCAGAATCTACAAGTTCCAGGCCGTCGGCACTGAAACATCATTCATCCCAGACTTCGCAGCATACGGCGTACAGACCCTGTACATTGACGGGAAGTTCCAGGTTCCAGACATCAACTACAGCTACAGCAGCACAACAGGCGCTGTGAGCTTCCTCACAGGTTCCCCTGCAGCTGATGTTTGGGTTGTGGCTGAGATGTCTGTAAAGCAACCGAATATCAGCCCTCTGTTCGACCGTACAATTCAAGAAATCGCCAGAACCTACAATATTGGCGAATCCCAGGTAGTCATGAGCACTAACCTGTCTACATCTCTAGACACCAAGACCCATATCTATGACGTTGACCAGCAGAAAGTGTGGGGTATCCCATCCGGCTATCTACCGTCTGGAGCCAAGGTGGTCGAGTTGTCTGGAAACACGCTCACTTATGATGTGAGTGGTTCCCAAGCCACAGTCACTTTGGTCCCTGCGTTCAACGGATCTGAAGACCTCGCTCAACGTGTGAAACCTGCACTGTTCACGAAGTTGAAATCAGTGACGTTCACCACTGGGGCTATCGTCAACCAGAATGAAGCACTGCTACATTCTGATGGGATGTACTATGTCAACACTGGGACTTCATTCCCTGTTATTGTCGCCCCTGCGTCTGCGCCTACAGCTTCTTGGGTCGCGGTGGGTCTGCTCAACAGGTATGACATCTCCGACAGCCGCGCATGGTATGCACCTTCCAGCACTGTTGACAATACTGTTCCGCTGAAATTGTTCATGTCTCTGATGACCAGCCTGAAGACAAAGGCTACCATGGTGGGTGATGTTCTCGTGTCCAGCTGTATTGAATTCGATACGGATCTTGACCAATCATCCGCCCGCATTTTCGTTAGCCCTGACAGCGACACCACTGTAAGCGGTGGCGGTGGCGCGGTATTCCGCTGTAAAGATGTAGACACTGTTGTTCTTACAGGACAAAGTTTTGCCACCAGCAACATTGGGCAGCTGAGTCACGTTCAATTGTCTGGAGCAGCGTTCAGCAACACGACGGTTGGTGTAGAAGGTGAAGGGGACACAAACCGCGCTTATTTTCGCGGCACTTTCGACACCTACACACAAGCGGCAGACCTCTATGTGATGGACGGTGGGACAACAGGTAATCACCCAGAAACAGAGGCTCTGTTCAAATTCAACGACACAGCCAAATTCACTATCCGTCCATTGCGAGCTGGGCGTCTGATTCGTGGTGGTGTGTATGTTCTATCTGCTCCATTATCTGGATCTCGCAGCCTGCGAACCTGTATTGCGATTGAACGCAACAACACATGTCTGATGGGTGGTTACTTCGATCCCCAGAGCACTGGTTTGGTTGCTGAATCTTACACTCAGTTGTCATATGTGACAGATTGCTCTGTCTTAGGCGTATCTGTGCCCAATGAGGCAGTTAGCTCGAACTACGCAATCCTGTGTTATGCAACAAACCGAATTTATGTCCAACACTGCCATGCTCCGAGCGGTTGGGCGTTGGTTGACGGGAACTTCATGCGCAACACGGTTGTTGAAGACAGCTCCGGCGCGACCATTGGCTGTCATGCTATGGCATGGAACTTCACAGTCAACCGTTGCACGCTGACACCTATCATAGTCAACAGCAAATATCAGGGTGGTATTTCTCTGACGGGCGGCGGCCTGTTGAAAGTCAAAGACATCGTCTACACCTACATGGGCGGCGACCGCAGTCTTGACCACCCTGTGTCCACCCGTGGGGATTATGGTCAAAGTTGGGAAGGCGATATCGACATCTCTGGTGTTGTGATTCGTTATGCGGCTATCCCTACCAGCGGTCAGGGTCTGGCGATTGTGTATGCCAACGGTGCTGACTTCGGTGCCACAGACCTCACCCGCACCAATGTGTACCTGGGTGGTAAGCGCTTGTCTATCCAAAACGTTGAGATCCAGATTCTCAATGCTTCTTGGACTGCGTCTCAGATAGTGATCAACCCAGCTTGGTTCCAGACCACGTACACTCAGACTGTACAGTATCCTCTGGAATATGTGGTGAAGGATTTTGAAGTCACGTTATCCGGCTTGCCAACCAACGTGTTCACTATGGACCCACGATTCCCGCTGCTGGTGTCTGACCCATCAGCGGTGCAGTCTACTTGTCGGATCCACTTCAGCAACGTGCGCTGGCCTAACAACAGCATCATGTTCGTTGGAGCGGCTGCTTCCACCACTTATCGGGTTACTGCTCTGCTGACGATTGAGGAAGGCAAAAGCCCACTCTACATCAACTTGCTGGCGCTCCCTGCCAACAGCGTGGCGACAATTCGCCGCTGTACCATCGGGAACCTTGCATTGGGCAACGCCAACAGTGCTGGTGAGTATCGTTTGGAACGAAACGTTGTTACTGGGACCAACTTTGGTGGTTCCGGTGGCGGTGCAGACAAAGCGTACTACTACGAAAACCACATCAACACCACCAACGCAGTGGCAGTTGGTTCGGTGGCCAAGTACTGCCATGGCAACACTGCGATATTTGGCGGCAGCATCACTGGTCGCTCGATTGATGAGTGGTATTCTTACCGTGATCCGGCGGTATTCCGTACTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
270bfb57013c1ce52fba910966b584115db11e0a05479bd95a0faa05916a1978
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6713
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50